UFO10796.5prime Sequence
1022 bp (754 high quality bases) assembled on 2012-01-17
> UFO10796.5prime
CAGTCGACATCCTTGGAAAATGGGAGGAAACCGGGCCGCAACGCTGGCGT
TGCTCTTCGCCAGCAGTTTGCTTCTGCTGAGTGCGGCCAATGCCGCCGAT
TTGGACACGGAGTCGGACGACTTCGAGGATGGTTATGTGGAGGATGTGCA
GGAGGAGCCCGCCGTCATCGGTGGCGATGAGAAGCTGGCCTACGAGAGCC
CGGTTATCGATGCCAAGAAGTTCCACTTCGCGGATCACTTCGACGACGTG
GAGGAGTCCAGGAAGAGGTGGGTGCTGTCGCAGGCCAAGAAGGACGACAT
CGCCGAGGAGATCTCCAAGTACGACGGCATCTGGAACTGGGAGTCGCCGC
AGCGCATCGTTTGGGCTAACGACTTGGGTCTGGTGCTCAAGTCGAAGGCC
AAACACGCGGCCATAGCCGCCCCCCTCCGCAAACCGTTCGAGTTCAAGTC
GGACAAGCCGCTGGTGGTGCAGTACGAGGTCACGTTGCAGGAGGGTCAGG
AGTGCGGTGGCTCGTATCTGAAGCTTTTGTCCGCCGGAAAAGACACGGAG
CAACTAAAAGCGTTCAATGACAAGACACCCTATACCATCATGTTTGGACC
GGACAAGTGCGGCAACGATGTGAAAATGCACTTCATATTCCGGCACGTCA
ATCCAATTAATGGCACCATCACCCGAGAAGCACTGCAACAAGCCAAAGAA
CCGTTTGGAAGAGCCCTTTCAAGGACAAGCTACCCCATCTCTTACCAGCT
GGTGGTTCCGTCCCGATAACAGCTTTGAGATTCGCGTTGACCCACAAGAT
CATCAATGAAGGGTTCCCTGCTAACCGATTTCAGCCACCAGTCAACCCGC
CGGCAGAGATCGACGACCCCAATGACCACAAGCCCGAATCGTGGGGATGA
GCGAGAGAATATCCAGAATCCCACTTGCCCACAAGCCCGAAGGATGGGGA
TTGAAGGATGCTCCACCCAGTTGGCCCGATACCGAATGGCGTCATGGCCC
ATATGTCTGCTCCGAAAAAATG
UFO10796.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:55:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cnx99A-RE | 2620 | CG11958-RE | 231..1202 | 14..996 | 4430 | 97.8 | Plus |
| Cnx99A-RD | 2092 | CG11958-RD | 231..1202 | 14..996 | 4430 | 97.8 | Plus |
| Cnx99A-RB | 2623 | CG11958-RB | 231..1202 | 14..996 | 4430 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:55:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12177719..12178601 | 914..14 | 2350 | 86.4 | Minus |
| X | 23542271 | X | 16524341..16525138 | 940..136 | 2260 | 88 | Minus |
| 3R | 32079331 | 3R | 29318273..29318617 | 491..147 | 1725 | 100 | Minus |
| 3R | 32079331 | 3R | 29317233..29317511 | 985..698 | 765 | 92.4 | Minus |
| 3R | 32079331 | 3R | 29319230..29319368 | 152..14 | 680 | 99.3 | Minus |
| 3R | 32079331 | 3R | 29317835..29317970 | 698..562 | 635 | 99.3 | Minus |
| X | 23542271 | X | 20875117..20875303 | 76..262 | 500 | 84.5 | Plus |
| 3R | 32079331 | 3R | 29318069..29318142 | 562..489 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:55:43 has no hits.
UFO10796.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-17 09:58:29 Download gff for
UFO10796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cnx99A-RC | 247..1229 | 14..1009 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:05:58 Download gff for
UFO10796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cnx99A-RB | 231..1213 | 14..1009 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:51 Download gff for
UFO10796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cnx99A-RB | 231..1213 | 14..1009 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 21:33:51 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 18:05:58 has no hits.
