UFO10801.5prime Sequence
718 bp (679 high quality bases) assembled on 2012-01-19
> UFO10801.5prime
CAGTCGACATGCATACGCCGCCCTTTAAATCCAATCGATTCCCCTTCGAG
GGCAGCCAGGTGCGAGTTCTGCTCTACAAAGAGGATGATACTCGGCGATT
GCTCTTCGACTCGAATGCCCTCCAGAAGGTGATGCACAAGGACCAATCGG
CCACATCCGCATCCATATCATCGACCAGTACGAGTGGCGGGGGAAAGTTC
CTTAAGAATGAGAAGTACACATCGCTGCAGAATGGCAAGATTCCGTCGAA
GTCACATTCCAGCAATGGTAGCAATTTCATCGAGGTGTGCGCAGAGTACG
GCTATAAGCACAATCGACCCTCGGGAGCCGACATCACGCCGGTGGGCGAA
ATGGTGTTTGGCTCGTTGCCGATGTCCTTTTGCGGAACGGCTCTGAAGGT
GCACTGGCTGCCGGAACCGTCCAGAATCCTGTGCTCCCAGGTCTACCTGA
CGCCCACCAGTAATGGAGGATCTGGCCACTCGCCGTACTCTACGCTCTCC
ACGAATAGCCTGGCGACGCCGCGCACATCGATATGCAGCGAGCATGGATC
CATGGATGGTCTCTCGATGAACTCGTTCTCAATGCCGTTCAGCGTGAGTG
TAGGTCGGCAGATGAGCCTGACGCCACCGCTGGACGTTCCGGCGACGCCG
GCTGCCCTGTTTACTCATACTCTTGGGGGGACTGAAGTGCTAGATCATTT
GGGGTAAGGTATTATGCA
UFO10801.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3764-RC | 5092 | CG3764-RC | 242..888 | 8..654 | 3235 | 100 | Plus |
| CG3764-RA | 5195 | CG3764-RA | 345..991 | 8..654 | 3235 | 100 | Plus |
| CG3764-RB | 6001 | CG3764-RB | 1178..1797 | 35..654 | 3100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16999202..16999549 | 654..307 | 1740 | 100 | Minus |
| 3L | 28110227 | 3L | 16999739..17000012 | 308..35 | 1370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:00:33 has no hits.
UFO10801.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:16:57 Download gff for
UFO10801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3764-RA | 253..905 | 1..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:21 Download gff for
UFO10801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3764-RA | 339..991 | 1..654 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:50 Download gff for
UFO10801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3764-RA | 339..991 | 1..654 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:50 Download gff for
UFO10801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16999202..16999547 | 309..654 | 100 | <- | Minus |
| 3L | 16999739..17000012 | 35..308 | 100 | <- | Minus |
| 3L | 17001516..17001546 | 1..34 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:21 Download gff for
UFO10801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16992839..16993112 | 35..308 | 100 | <- | Minus |
| arm_3L | 16994616..16994646 | 1..34 | 91 | | Minus |
| arm_3L | 16992302..16992647 | 309..654 | 100 | <- | Minus |
