UFO10802.5prime Sequence
755 bp (679 high quality bases) assembled on 2012-01-19
> UFO10802.5prime
CAGTCGACATGAAGTACGGATGCGGATTACTCAGGAATGGCACCACGGGC
GCTGTTATGGTCGGATTAGTTTGTGGCCTTTATGTTTGCAGCGGCCAATG
TGATAAGGTGGAAGTAATAGAGCTGAGCAATTGGACGATAACTAATCAGA
ATGGCTCCCTGACTATTGCCAACCAAACGTTGCCCTTGGGCATATACAGT
GCCTTCGCACCCCAAGTGCTGGACTCCTACAACGACGTCGGTCTGCGTTA
CTTGGCCTACGACAACTTTACCTTCTCCAATTTCTTTCAGTTCGACGTTC
ATCACTTCAATCGCGGCCACATCAACCTGACGTTTCACGGCATTGACACG
GTGTCGGAAATCCGGCTGAACCATCAACTGCTGGGACGCACGGACAACAT
GTTTGTCCGCTACTCTTACGAAGTGAGTTCCCTGCTCCAAGCGGAAAACT
TTCTGGAAGTTGAGATCCAATCTCCAGTTGTGGCTGCTTTGGCAAGAGCC
AATGCTTTAAAAGAAGCTAAAAAGAGCGTGCCTCCCGAATGCCCCAACGA
GCGCTACCATGGTGAGTGCCACATGAACATGCTGCGGAAGATGCAGGCTA
GCTTTTCCTGGGACTGGGGTCCGATCTTTGTTGAAGGATGATTCAGGGAC
TAGGTGGCTACCCTGCGTGATGTTCTGTCGCGAGGAATCTGAACCATGTG
CGACATGTAGGCCGACAGTACGACTGACATCTGCAGCGTAGGCAACCCCC
GACAG
UFO10802.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12582-RD | 2922 | CG12582-RD | 96..710 | 8..622 | 3075 | 100 | Plus |
| CG12582-RH | 3029 | CG12582-RH | 210..823 | 9..622 | 3070 | 100 | Plus |
| CG12582-RA | 3035 | CG12582-RA | 210..823 | 9..622 | 3070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4198259..4198589 | 292..622 | 1655 | 100 | Plus |
| 3R | 32079331 | 3R | 4197415..4197562 | 9..156 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 4197737..4197871 | 157..291 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:00:36 has no hits.
UFO10802.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:16:58 Download gff for
UFO10802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12582-RA | 101..722 | 1..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:23 Download gff for
UFO10802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12582-RD | 89..710 | 1..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:51 Download gff for
UFO10802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12582-RD | 89..710 | 1..622 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:51 Download gff for
UFO10802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4197407..4197562 | 1..156 | 97 | -> | Plus |
| 3R | 4197737..4197871 | 157..291 | 100 | -> | Plus |
| 3R | 4198259..4198589 | 292..622 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:23 Download gff for
UFO10802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23129..23284 | 1..156 | 97 | -> | Plus |
| arm_3R | 23459..23593 | 157..291 | 100 | -> | Plus |
| arm_3R | 23981..24311 | 292..622 | 100 | == | Plus |
