UFO10803.5prime Sequence
1161 bp (1033 high quality bases) assembled on 2012-01-19
> UFO10803.5prime
CAGTCGACATGCACAAAATGGTTAAATTATTCCTCAGAGAAGTTCTGAAT
GCATGGCGAGCAAAGGCCAGATGCAATGTGGTGCCCGACGAACGGACACA
GGAACTCTTCCACGAGCTAAGCTTCCATCCTAGCCAAAAGCAGATTAGCG
AAATGCTGCAGACTGCCAAGAAAGTGGCCCGCAAGGGAGGAAGTGGACAG
GCAAATGGGCTGACTTTTGGCCAGTTTTGTGTCTTAGCCGCGGATCTGAA
ACGTTTCAGAGCTTCAACAATTTCGAATCAGCCATCGTACTGCGACTATC
AGTCTCTGTCCGCGGGACTGCTGCTCCCGGAACTAGATGATCCTGCCAGC
TCGTCCAATCAAAACCTTCAGTCGCCAGCGGCCACCAACTCGTCACCTGC
GCACAGCTCCAAGAAGCCGGATAACCACGGTACCGAACTGAGGAGTACCA
AGTCCTTTAGCAGTGTGGACGATACCAAAAAGAAAAAGAACGCCACCAAT
GAGCCCGTCGAGGTTTTCCTTGGCGGATCCTGCAATCCGACAACCTGGCG
AGCCGACGTTGCCATACCAGCCCTCAAGGAGCTGGGCATTTCGTTTTACA
ATCCTCAAGTATCCGATTGGACGCCCGATCTCATCGAGCTCGAGCATCGA
GCTAAGGAAAAGGCCCGTGTATTATTCTTCGTTATGGATTCGGAAACACG
CGCATCTGCTGGTGCCATCGAGGCGGCACACATAGCGGGTCAAAACTGCA
AGCAGCTGGTGTTGGTTTTGCATCCGTATAAACCAAATCAGAGATCCTCA
ATGAGCCTATTTCGCAGCAAGAATACCTCGATCTGAATCGCAATCAGTTG
ATACTTAGGAGCTGGTCTCCCGACGCGGTCTGCCCGTATTGATAACATAC
CACTGGGTCTGCAGCGCACTAAGGATATCCTGGGTGGCATCAGGATCCAC
GTCAAATATCTTCTTTTTAGATACCGTCGCGGCGCCTTTGATCGTGTATC
GCTAACGATCTGCTCCTGTGGACATGCAACTGCTTCTATCTAGCTTGCTC
AGTTAGTATAACCATTAATAGATCTTACACAGCGATCGTGATGTCACGCA
GTCAGACTGCAGAGGGATGCATGCCATGACAGCATCCCACGACTACACTG
ATGTTGGTATC
UFO10803.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| raw-RB | 3220 | CG12437-RB | 248..1275 | 9..1022 | 4810 | 98.6 | Plus |
| raw-RC | 3954 | CG12437-RC | 1010..2009 | 37..1022 | 4670 | 98.6 | Plus |
| raw-RE | 4275 | CG12437-RE | 1331..2330 | 37..1022 | 4670 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8712674..8713022 | 605..257 | 1745 | 100 | Minus |
| 2L | 23513712 | 2L | 8712388..8712602 | 819..606 | 1025 | 99.5 | Minus |
| 2L | 23513712 | 2L | 8713089..8713203 | 259..145 | 575 | 100 | Minus |
| 2L | 23513712 | 2L | 8713264..8713373 | 144..35 | 550 | 100 | Minus |
| 2L | 23513712 | 2L | 8712177..8712303 | 944..820 | 535 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:00:40 has no hits.
UFO10803.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:16:59 Download gff for
UFO10803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| raw-RB | 242..1291 | 1..1034 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:26 Download gff for
UFO10803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| raw-RB | 242..1291 | 1..1034 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:53 Download gff for
UFO10803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| raw-RB | 242..1291 | 1..1034 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:53 Download gff for
UFO10803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8712674..8713019 | 260..605 | 100 | <- | Minus |
| 2L | 8713089..8713203 | 145..259 | 100 | <- | Minus |
| 2L | 8713264..8713370 | 38..144 | 100 | <- | Minus |
| 2L | 8712145..8712303 | 820..971 | 95 | <- | Minus |
| 2L | 8712388..8712602 | 606..819 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:26 Download gff for
UFO10803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8712388..8712602 | 606..819 | 99 | <- | Minus |
| arm_2L | 8712145..8712303 | 820..971 | 95 | <- | Minus |
| arm_2L | 8712674..8713019 | 260..605 | 100 | <- | Minus |
| arm_2L | 8713089..8713203 | 145..259 | 100 | <- | Minus |
| arm_2L | 8713264..8713370 | 38..144 | 100 | <- | Minus |
