UFO10804.5prime Sequence
1048 bp (965 high quality bases) assembled on 2012-01-19
> UFO10804.5prime
CAGTCGACATGTTGGATGATTACTACACCTGGACTTACCCGGATATACCC
GAAAATGTGGCACAGGAGCTGCTGCAGCTGAACGGTTCGCTGGTAGTGGT
CGGAATCGTTGGCCGGTCGGATTGCGACCAGGCCAACAAGATGGTGGCTT
TCGGCATGGAGCCGCCTAGTGAGCACACACCCAAGGACGGCCAGATGCAG
TGTTACTACAAGCCGGGTACCTCCATCCTGCTGCTGCACTTCGAAAGCAC
CTACGACGCGGAGATTGCTGGCCAGATGATAGATGTCTGCATAGAGGATG
TGGATACTCCCTTCGACATCGACAGCTTCTTCGAGGGGATACGATGTCGC
TTCGTGCGCATGATGCTGCTGGCCCTGCACGTTTGCCACATTGTGGTGTA
TGTGGAAACTGGGCAGACGTTTGATCCGACACTAATCACCGTGTTCCAAT
TGGCCAAGTTCGCCAGGGAACAGCATTTGATGCAGTTCTTGCCACAAATG
CTTAGAGAAACGCCTGCCGCCAGAATGAGCGAGCGCACACGACTGTGCAC
TCCCAGGATTCTCTTCCTTTTCGAAAACTTTCCGAGCGACGAGCCAAAGA
CACGCGAATGCGTCTCTACATACGAGATCCAGATGGAGGACTGCATCTAT
GAGTTGTTGCGCCACCACAACATCGTGACCAATAGCAGCAGCAACTCGCT
TGTGGCACTTCCCAATAACAAACAGTTCGTCTTCTTCAACGCACACGAAG
AGTTGCGTGAGGACACGCTGATGAATGCCGTCGAATGCCTCAATGAGACA
ATGTACAAGCCGGATCTCAAGAGGAGGAGGAAGACCTAGAGATCTTGGCG
CTGGCTCCCTTCGATGGCTTCGTCAAACCCTTCGCTTGCCGGTCGATGAG
AAGAGTGGGATAATCAGCAGTACAGAAGACCACACCGTGTGAACTTTCTG
GAGCGAACCTTTCAGGACCCTTGATGGTTGCTTTGAAGCGGGTTCCTTCA
AGCAGCATGCCCAGCAGGTACGTTTCACCTGCAAATATACCAGGATGG
UFO10804.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6729-RA | 2993 | CG6729-RA | 62..1086 | 9..1024 | 4780 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10742806..10743770 | 1018..62 | 4310 | 98.1 | Minus |
| 2L | 23513712 | 2L | 10743822..10743874 | 61..9 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:00:44 has no hits.
UFO10804.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:16:59 Download gff for
UFO10804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6729-RA | 53..1099 | 1..1037 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:27 Download gff for
UFO10804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6729-RA | 54..1100 | 1..1037 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:54 Download gff for
UFO10804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6729-RA | 54..1100 | 1..1037 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:54 Download gff for
UFO10804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10742785..10743770 | 62..1037 | 97 | <- | Minus |
| 2L | 10743822..10743882 | 1..61 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:27 Download gff for
UFO10804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10742785..10743770 | 62..1037 | 97 | <- | Minus |
| arm_2L | 10743822..10743882 | 1..61 | 95 | | Minus |
