UFO10807.5prime Sequence
1102 bp (1034 high quality bases) assembled on 2012-01-19
> UFO10807.5prime
CAGTCGACATGTCTTCCGGCCTGATGTCGTGTGTAAGGGAAAACTCGCCG
CCGCTGGAATCGGAGTTGGATGCCAGCTGCGCCGGGGGACCATTGTCATT
GCCGGCGGGCCGCGCCCACCCGCACACCCACGGCGCCACCTCAACGCCCA
TCTCCAGTCCAGGAAACGATGCCCATCAGTCCCCGACCGCCGAGCATCCA
AATCAGCAGCAGCAACAGCAGCAGCAGAAGCGTCGTCGTTTCCATCCGCT
TCGTAACCTGCGTCGCATCTTCCGGCGACGTACGATTAATAGCTCCACGG
ACAGTCCAGCATCCTGTCAGTCGCCAGGACCCGGATCCTGCAACACCTTG
CCACCGCCCGCCAGCAGCAGCAGTGAGAAGAATCTGCGCAGCGGGATCGC
CTCGCCAACAGGATCTCCCCTGAATCCCCAGCAGCTGAAGGAGAACTACC
AGACGCAATCGCTGCCCAAGTCCAAATCGTACGGTTCGCATCGCGATGAG
CTGCTAAGTGTGCTTCTGGGCAAAAAACGGGCCAGCAAGCAGGACCACAG
CCAGGTTGCAGTCCAACCCGATTCCCAAGCGCAGTCGCAATCGCCGCAGG
AAGCCATGTACCAGGCCCAGTGACAGCATGGCGGCGTGGCCGTCTTCCCG
GATTCACTAGTCCTTAACCGGAGCAGCTACTTTGCCGAGCAGAGAATCCA
ACAGCGCCATCTACGCAGCGTGGGTGACTCCTCGCAGGAACTGGAGTCCA
ACCTAGGCTTGGGATCACGATCAGGATCATGATCCGGAGCTGGTGGCGCC
GCTGACATCTCCGACAGCCAGCGTAGCCTCAGCGAAGGTCGACTCCTGGT
GTGGACGGGGATTACTCTCGGGATACCCTGTCCCAGTCACATGACAGCGT
CTTCTCTGAATCGGCCACAGCCAGCAGTCTATCCATTGTAGTCAAGGCGG
AACTCACGGATGTCCTGCGCAAGCGACGCACAGACCCGATGCCTCTGAAG
GAGATTTGGGTCTGCCCCGCAGCCCGGCTTCTCCCGCAACGGCGGAGCAG
GGGGGGAACAGCAGTCGAAATACCTCCGGAGTGGGTCACCAAATCCCGGG
TC
UFO10807.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30015-RF | 5363 | CG30015-RF | 172..1259 | 7..1092 | 5195 | 98.8 | Plus |
| CG30015-RB | 6242 | CG30015-RB | 1052..2138 | 8..1092 | 5190 | 98.8 | Plus |
| CG30015-RA | 5525 | CG30015-RA | 335..1421 | 8..1092 | 5190 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10848593..10849261 | 859..192 | 3250 | 99.4 | Minus |
| 2R | 25286936 | 2R | 10856124..10856308 | 192..8 | 925 | 100 | Minus |
| 2R | 25286936 | 2R | 10843365..10843513 | 1092..945 | 465 | 92 | Minus |
| 2R | 25286936 | 2R | 10848452..10848541 | 947..858 | 435 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:00:51 has no hits.
UFO10807.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:01 Download gff for
UFO10807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30015-RB | 979..2082 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:32 Download gff for
UFO10807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30015-RF | 168..1269 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:57 Download gff for
UFO10807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30015-RF | 168..1269 | 1..1102 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:57 Download gff for
UFO10807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10843355..10843511 | 947..1102 | 93 | <- | Minus |
| 2R | 10848453..10848540 | 859..946 | 98 | <- | Minus |
| 2R | 10848594..10849260 | 193..858 | 99 | <- | Minus |
| 2R | 10856124..10856311 | 1..192 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:32 Download gff for
UFO10807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6730860..6731016 | 947..1102 | 93 | <- | Minus |
| arm_2R | 6735958..6736045 | 859..946 | 98 | <- | Minus |
| arm_2R | 6736099..6736765 | 193..858 | 99 | <- | Minus |
| arm_2R | 6743629..6743816 | 1..192 | 97 | | Minus |
