UFO10808.5prime Sequence
985 bp (903 high quality bases) assembled on 2012-01-19
> UFO10808.5prime
CAGTCGACATGTACTCCGAGTGGGCCTCGCTGTCTGCCCAAATCACAGCC
AACAGCTGCGGCGCCCAGTGCTTCAGTGTGCTCAACAAATTCCCCGCCTC
CGCCGGACGCGAAGTGGTCGTCTCCGTGGTCAAGCAGCTGGGCACCAATC
TGGGCATCACGCAGAATGCAGAGCCCAGTCACCTGGTCAAAGACGAAGAG
GTAAAATGGTGCATGGACGTGATCTGCTTCGGACTTTCGCTTCCTCTGCA
GGAACACGAGACGATCAAGGATTGCGTGAATGTGTACTGCGAGTGGCTGA
CGGCGCTGCATCCGCAGCCCAGGATCAGTGTACCGAAGCCGATATGCGAG
GATGCCAATCTCTATGCTCGCCAGATCATCAATCACTTTCACAATCTGTT
TGTGCCGCGCCAGGGCGAAAGTGCAGATACAATTAAACGGCAGGCAGTGC
TCTGCCATCGGGTGCTACGAACTCTGCAGCAAACTGCTCAGATATCGCAG
CTAATGGATCGGCAGACGTGGGACACGCTGCTTCTCTTTCTGCTGGCTAT
CAATGAGATCCTGCTGGCGCCGCCCACCGTCAAGGACGATGTGGGCGATC
AGCTGTGCGAGCGTGTGCTATCCGTGCTCTTCGAGGTCTGGCTTCTGGCC
TGCGTTCGCAGTTTTCCCTCACCGTCGATGTGGAAGACGCTGCAGGAGTC
GTGTGCCATGTGGCGACACCGTGTAGCCCTCGTGGATCAATGGAATCGAG
TGAACTTGGCACTAACCGCTCGCCTGCTGGAGTTCAGCTATGGTCCTGCG
TTTCCACAGCTCAAGAATGCCGACGAGGATGGGCAGTGTACATGATGCAC
ATGGGGCAATGACGTCTGTTGTGATCCGGCGCCTCCCACCATGCTGTACT
AGCACATCCGATGACAGATCATTATCGCAGCTGAGACGACCGATAGGACT
CAGAGATCACAGTATGATGCATGATGTTAGTCTGG
UFO10808.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34408-RI | 5044 | CG34408-RI | 440..1267 | 9..836 | 4125 | 99.9 | Plus |
| CG34408-RG | 5602 | CG34408-RG | 440..1267 | 9..836 | 4125 | 99.9 | Plus |
| CG34408-RE | 5812 | CG34408-RE | 440..1267 | 9..836 | 4125 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10221866..10222264 | 421..819 | 1995 | 100 | Plus |
| X | 23542271 | X | 10221361..10221584 | 199..422 | 1120 | 100 | Plus |
| X | 23542271 | X | 10220549..10220742 | 9..202 | 970 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:00:55 has no hits.
UFO10808.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:01 Download gff for
UFO10808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34408-RB | 436..1274 | 1..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:34 Download gff for
UFO10808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34408-RE | 436..1274 | 1..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:58 Download gff for
UFO10808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34408-RE | 436..1274 | 1..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:58 Download gff for
UFO10808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10221363..10221582 | 201..420 | 100 | -> | Plus |
| X | 10221866..10222264 | 421..819 | 100 | -> | Plus |
| X | 10220545..10220740 | 1..200 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:34 Download gff for
UFO10808.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10114578..10114773 | 1..200 | 98 | -> | Plus |
| arm_X | 10115396..10115615 | 201..420 | 100 | -> | Plus |
| arm_X | 10115899..10116297 | 421..819 | 100 | -> | Plus |
