UFO10809.5prime Sequence
1058 bp (993 high quality bases) assembled on 2012-01-19
> UFO10809.5prime
CAGTCGACATGTCGAACCTGTATGTGCTGTACGAGCATGCGGCGGGCTTC
TCGCTCTTCTCCGTCAAGGAGTTCGAAGAGGTGTCCATGTTCCTGCCCCA
GGTGGAGTCCTCGGTGACGGACCTCGCCAAGTTCAACTCAATTGTTAAGC
TGGCTGGATTTGCACCTTTCAAGACGGCCATTGCCGCACTGGAAAACATC
AATGCCATATCCGAGGGCATAGTGCCGCAGGATCTGCTCTCCTTCTTGGA
TGACTTCTTTGCCAAGCTGAAGAAGAAGAAGTGCACCCTGGGTATTGCGG
ATGCCAAGCTGGGAGCTGCAATCACCGAGGCCATTGGCGTCCAGTGCAGT
CACTTTGGAGTGGTTCCTGAGATTCTGCGCGGCGTGCGATTCCACTTCGC
TAAGCTGGTCAAGGGATTCACCGACAAGTCCGCTGGCGTTGCTCAGCTGG
GTCTGGGCCACAGCTACTCGCGTGCCAAGGTCAAGTTCAATGTTCATCGT
TCCGACAACATGATCATCCAGTCGATTGCTTTGCTGGATCAGTTGGATAA
GGACGTAAATACCTTCTCTATGCGGATACGCGAGTGGTACTCGTATCACT
TCCCAGAACTGGTCAAAATCGTTCCCGACAATTACATGTTCGCCAAGGCG
GCCAAGTTCATCAAGGATCGCAAGAACCTCACGCAAGACCAGCTGGAGGA
TCTTGAGAAGATCGTCATGGACTCCGCCAAGGCTCACGCTATCATTGATG
CCGCCAAGATGTCCATGGGCATGGACATCTCCATTGTTGATCTGATGAAC
ATTGAGCTGTTCGCAGAGCGCGTTGTCAAGCTTTCCGAGTACCGAAGAAC
TGTCTACCTACTTGCACAACAAGATGAACTTGGTGGCTCCCAATCTGCAG
TCTTTGATTGGCGACAAGGTCGGTGCCCGCCTGATATCGCATGCCGGCAG
CTTGACTATCTGGCAAGTACCAGCATCTACAGTACAAATCCTGGGTTCCG
AAGAAGCGCCTCTCCGGGCCTCTTAGAGACCCGCTTCCATAACGCCCAAG
TTGTGGTC
UFO10809.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nop56-RA | 1746 | CG13849-RA | 110..1157 | 6..1051 | 4845 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22419731..22420323 | 1001..414 | 2675 | 98.3 | Minus |
| 3R | 32079331 | 3R | 22420387..22420791 | 415..11 | 2025 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:00:58 has no hits.
UFO10809.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:02 Download gff for
UFO10809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 106..1125 | 1..1016 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:36 Download gff for
UFO10809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 106..1125 | 1..1016 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:00 Download gff for
UFO10809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 106..1125 | 1..1016 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:00 Download gff for
UFO10809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22419716..22420322 | 415..1016 | 97 | <- | Minus |
| 3R | 22420388..22420796 | 1..414 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:36 Download gff for
UFO10809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18245438..18246044 | 415..1016 | 97 | <- | Minus |
| arm_3R | 18246110..18246518 | 1..414 | 98 | | Minus |
