UFO10810.5prime Sequence
1064 bp (1001 high quality bases) assembled on 2012-01-19
> UFO10810.5prime
CAGTCGACATGATGAGTCTAAGGATTTGCCTGCTGGCCACCTGCCTCCTG
GTGGCGGCCCATGCCTCCAAGGATGCCTCCAATGACCGACTGAAGCCGAC
CAAGTGGCTGACCGCCACCGAGCTGGAGAACGTGCCCTCCCTCAACGACA
TCACCTGGGAGCGTTTGGAGAATCAGCCGCTGGAGCAGGGCGCCAAGGTG
ATCGAGAAGATCTACCACGTTGGCCAAATCAAGCACGATCTGACCCCCAG
CTTTGTGCCCAGCCCGAGCAATGTGCCCGTCTGGATTATCAAGTCCAATG
GACAGAAGGTTGAGTGCAAGTTGAACAACTATGTGGAGACGGCCAAGGCA
CAGCCCGGATTCGGCGAGGATGAGGTCACCATTGTCCTGACTGGTCTGCC
CAAGACCAGCCCCGCTCAGCAGAAGGCCATGCGCAGGTTGATCCAGGCCT
ACGTCCAGAAGTACAACCTCCAGCAGCTGCAGAAGAACGCCCAGGAGCAG
CAGCAGCAGCTCAAGAGCAGCGACTACGACTACACCAGCAGCGAGGAGGC
CGCTGACCAATGGAAATCCGCCAAGGCTGCCAGCGGCGATTTGATCATCA
TTGACCTCGGCTCCACCCTGACCAACTTCAAACGCTACGCGATGCTGGAT
GTTCTGAACACCGGCGCCATGATCGGCCAGACCCTGATCGATCTGACCAA
CAAGGGTGTGCCCCAGGAGATCATCCATCTGATCGGCCAGGGAATCAGCG
CCCATGTGGCCGGAGCTGCTGGCAACAAGTACACCGCCCAAACCGGACAC
AAGCTGCGCCGCATCACCGGTCTGGATCCCGCCAAGGTGCTGTCCAAGCG
TCCCCAGATCCTGGGTGGTCTGTCCCGCGGCGATGCTGACTTCGTTGATG
CCATTCACACATCGACCTTCGCCATGGGCACGCCCATCCGTTGCGGCGAT
GTTGACTTCTACCCCAACGACCGTCCACCGTGTCCGGCTCCGAGAATGTG
ATCGAAGCTGTGGCCCGTGCCACCCGTTACTTGCCGAGTCTTGTGCGTTC
CCGGTAGCGAAGCG
UFO10810.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yp3-RB | 1868 | CG11129-RB | 57..1111 | 9..1060 | 5105 | 99.2 | Plus |
| Yp3-RA | 1488 | CG11129-RA | 57..1111 | 9..1060 | 5105 | 99.2 | Plus |
| Yp1-RB | 1611 | CG2985-RB | 920..1095 | 792..967 | 370 | 80.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13760324..13760763 | 597..1032 | 2025 | 98.4 | Plus |
| X | 23542271 | X | 13759869..13760251 | 214..596 | 1915 | 100 | Plus |
| X | 23542271 | X | 13759602..13759806 | 9..213 | 1025 | 100 | Plus |
| X | 23542271 | X | 10054807..10054982 | 792..967 | 370 | 80.7 | Plus |
| X | 23542271 | X | 10051563..10051783 | 928..708 | 235 | 73.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:00:24 has no hits.
UFO10810.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:16:56 Download gff for
UFO10810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yp3-RA | 51..1115 | 1..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:18 Download gff for
UFO10810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yp3-RA | 51..1115 | 1..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:47 Download gff for
UFO10810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yp3-RA | 50..1114 | 1..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:47 Download gff for
UFO10810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13759595..13759806 | 1..213 | 98 | -> | Plus |
| X | 13759869..13760251 | 214..596 | 100 | -> | Plus |
| X | 13760324..13760793 | 597..1064 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:18 Download gff for
UFO10810.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13653628..13653839 | 1..213 | 98 | -> | Plus |
| arm_X | 13653902..13654284 | 214..596 | 100 | -> | Plus |
| arm_X | 13654357..13654826 | 597..1064 | 98 | | Plus |
