UFO10811.5prime Sequence
1015 bp (1000 high quality bases) assembled on 2012-01-19
> UFO10811.5prime
CAGTCGACATGAGTAAACCTGGCAGTGCTCCTCCGCAGTTCACCTATGTG
CCGCCCCCTTCGGCCCCGCCCTCTTACCAGGAGGCGGTGGGCGGAGTGAA
GCCGGTGGGTCCATATACGCCCGTGGTGGCGCCCGCAACCACGGCAAATA
CCACGATTGTGACCACGGTTGTGCCCATTAGCCGCACTTCGACGCACATG
ATCTGTCCATCGTGCCATGCCGAGATCGAGACGACTACGCGCACCGAGCC
GGGAATGATTGCCTACTTGTCCGGATTTTTGATTGCCCTATTTGGTTGCT
GGCTGGGATGCTGCCTAATACCTTGCTGCATCGACGACTGCATGGATGTG
CATCACTCGTGCCCCAACTGCCGCGCATATTTGGGGCGATACCGTCGAGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG
TCGCCTTGCGTAAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTG
TCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATT
GGCTGAGACGAAAAACATATTCTCAATAACCCTTTAGGGAAATAGGCCAG
GTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCC
GGAAATCGTCGTTGTATTCCCCTCCAGAGCGATGAAAACGTTTCAGTTTG
CCTCATGGAAAACGT
UFO10811.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:00:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32280-RD | 1279 | CG32280-RD | 245..636 | 7..398 | 1960 | 100 | Plus |
| CG32280-RC | 1440 | CG32280-RC | 406..797 | 7..398 | 1960 | 100 | Plus |
| CG32280-RB | 1144 | CG32280-RB | 110..501 | 7..398 | 1960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:00:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3167977..3168265 | 7..295 | 1445 | 100 | Plus |
| 3L | 28110227 | 3L | 3168334..3168437 | 295..398 | 520 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 21:00:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc4-element | 2791 | Doc4-element DOC4 2791bp | 2582..2683 | 370..267 | 118 | 61 | Minus |
UFO10811.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:16:57 Download gff for
UFO10811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32280-RC | 400..804 | 1..406 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:19 Download gff for
UFO10811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32280-RA | 71..475 | 1..406 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:48 Download gff for
UFO10811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32280-RB | 104..508 | 1..406 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:48 Download gff for
UFO10811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3167971..3168265 | 1..295 | 98 | -> | Plus |
| 3L | 3168335..3168437 | 296..398 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:19 Download gff for
UFO10811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3168335..3168437 | 296..398 | 100 | == | Plus |
| arm_3L | 3167971..3168265 | 1..295 | 98 | -> | Plus |
