Clone UFO10813 Report

Search the DGRC for UFO10813

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:108
Well:13
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptPu-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO10813.5prime Sequence

1102 bp (821 high quality bases) assembled on 2012-01-19

> UFO10813.5prime
CAGTCGACATGAGCTTTACCCGCCAACTGTCCGAGATGAGTGCCAGCGAG
CTGAACGATGCCATCGACGACACCAACTTCCCGCAGGCCCACATCCTTTC
GCGCGGACGCAACAACAGCGTCTGCTCAACAAGTAGCACCTCGGGCACCT
CCTCGCTGGCGGACAGGCAGCAGAACCAGGCGGAGGAGGCCACTGCCATT
GCGGGCACACCCGTCGAGGAGGTGGCGCCAGCTCCTGCTCTCGTCCCGTT
GGCCGGCAACCAGAGACCCCGCCTCATCCTGAAGACCAACGGCAGCAGTC
CGGATAGTGATGGCCACGAGAAGTGCACGTTCCACCACGACCTGGAGCTG
GACCACAAGCCGCCGACGCGAGAGGCCCTCCTTCCGGACATGGCACGCTC
GTATCGTCTACTCTTGGGCGGCCTGGGCGAGAATCCCGATCGCCAGGGAC
TGATCAAGACGCCGGAGCGGGCAGCCAAGGCCATGCTGTACTTCACCAAG
GGCTACGACCAGAGTCTCGAGGATGTTCTCAATGGCGCCGTTTTCGACGA
GGATCATGACGAAATGGTGGTGGTCAAGGATATTGAAATGTTCTCCATGT
GCGAGCATCATCTGGTGCCCTTCTACGGCAAAGTTTCCATCGGTTATTTG
CCGTGCAACAAGATTCTCGGACTCAGTAAATTGGCACGCATTGTCGAAAT
ATTTTCGCGTCGCCTGCAAGTCCAGGAGCTGTTAACTAAGCAGATCGCAG
TGGCCGTGACTCAGGCCGTGCAACCCGCTGGTGGTAGCAGTGGTTCGTAG
AGGGAGTCCACATGGTGCATGGTGATGCGTGGCGTGGCAAAAATCACAGC
AAACTGTTACCTCAACTATTGCTGGGGCGTGTTCCGAGACGATCCCAGAC
CCGTGAGAATTCCTGAACTTAGTCAATAGCAAAGCAGCTTTCTAGACCAT
TCGTTGGCGCCGCGGGCCCAGTAGTGTCATATCATATCATATCATATCAT
ATCCACACTAGCCTAGGAGAACTGTCATGACTAATGCTGGATCCACATAA
ACGCCGCGCACGACGTCTGACATCGATGAATCGAGCTACTGACTCACGGA
TC

UFO10813.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
Pu-RC 1744 CG9441-RC 174..1098 8..933 4320 98.4 Plus
Pu-RA 1793 CG9441-RA 527..1147 312..933 2800 97.6 Plus
Pu-RB 1625 CG9441-RB 359..979 312..933 2800 97.6 Plus
Pu-RA 1793 CG9441-RA 175..480 8..313 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21179292..21179597 8..313 1530 100 Plus
2R 25286936 2R 21179937..21180147 312..522 1055 100 Plus
2R 25286936 2R 21181419..21181585 522..688 835 100 Plus
2R 25286936 2R 21181644..21181761 688..807 455 95.8 Plus
2R 25286936 2R 21181842..21181962 815..933 255 91.9 Plus
Blast to na_te.dros performed 2014-11-27 21:01:13
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 2713..2743 918..948 110 83.9 Plus

UFO10813.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:05 Download gff for UFO10813.5prime
Subject Subject Range Query Range Percent Splice Strand
Pu-RC 168..1101 1..937 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:46 Download gff for UFO10813.5prime
Subject Subject Range Query Range Percent Splice Strand
Pu-RC 168..1101 1..937 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:06 Download gff for UFO10813.5prime
Subject Subject Range Query Range Percent Splice Strand
Pu-RC 168..1101 1..937 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:06 Download gff for UFO10813.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21181420..21181585 523..688 100 -> Plus
2R 21181645..21181761 689..807 95 -> Plus
2R 21181836..21181965 808..937 91 == Plus
2R 21179286..21179596 1..312 99 -> Plus
2R 21179938..21180147 313..522 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:46 Download gff for UFO10813.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17066791..17067101 1..312 99 -> Plus
arm_2R 17067443..17067652 313..522 100 -> Plus
arm_2R 17068925..17069090 523..688 100 -> Plus
arm_2R 17069150..17069266 689..807 95 -> Plus
arm_2R 17069341..17069470 808..937 91 == Plus