UFO10813.5prime Sequence
1102 bp (821 high quality bases) assembled on 2012-01-19
> UFO10813.5prime
CAGTCGACATGAGCTTTACCCGCCAACTGTCCGAGATGAGTGCCAGCGAG
CTGAACGATGCCATCGACGACACCAACTTCCCGCAGGCCCACATCCTTTC
GCGCGGACGCAACAACAGCGTCTGCTCAACAAGTAGCACCTCGGGCACCT
CCTCGCTGGCGGACAGGCAGCAGAACCAGGCGGAGGAGGCCACTGCCATT
GCGGGCACACCCGTCGAGGAGGTGGCGCCAGCTCCTGCTCTCGTCCCGTT
GGCCGGCAACCAGAGACCCCGCCTCATCCTGAAGACCAACGGCAGCAGTC
CGGATAGTGATGGCCACGAGAAGTGCACGTTCCACCACGACCTGGAGCTG
GACCACAAGCCGCCGACGCGAGAGGCCCTCCTTCCGGACATGGCACGCTC
GTATCGTCTACTCTTGGGCGGCCTGGGCGAGAATCCCGATCGCCAGGGAC
TGATCAAGACGCCGGAGCGGGCAGCCAAGGCCATGCTGTACTTCACCAAG
GGCTACGACCAGAGTCTCGAGGATGTTCTCAATGGCGCCGTTTTCGACGA
GGATCATGACGAAATGGTGGTGGTCAAGGATATTGAAATGTTCTCCATGT
GCGAGCATCATCTGGTGCCCTTCTACGGCAAAGTTTCCATCGGTTATTTG
CCGTGCAACAAGATTCTCGGACTCAGTAAATTGGCACGCATTGTCGAAAT
ATTTTCGCGTCGCCTGCAAGTCCAGGAGCTGTTAACTAAGCAGATCGCAG
TGGCCGTGACTCAGGCCGTGCAACCCGCTGGTGGTAGCAGTGGTTCGTAG
AGGGAGTCCACATGGTGCATGGTGATGCGTGGCGTGGCAAAAATCACAGC
AAACTGTTACCTCAACTATTGCTGGGGCGTGTTCCGAGACGATCCCAGAC
CCGTGAGAATTCCTGAACTTAGTCAATAGCAAAGCAGCTTTCTAGACCAT
TCGTTGGCGCCGCGGGCCCAGTAGTGTCATATCATATCATATCATATCAT
ATCCACACTAGCCTAGGAGAACTGTCATGACTAATGCTGGATCCACATAA
ACGCCGCGCACGACGTCTGACATCGATGAATCGAGCTACTGACTCACGGA
TC
UFO10813.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pu-RC | 1744 | CG9441-RC | 174..1098 | 8..933 | 4320 | 98.4 | Plus |
Pu-RA | 1793 | CG9441-RA | 527..1147 | 312..933 | 2800 | 97.6 | Plus |
Pu-RB | 1625 | CG9441-RB | 359..979 | 312..933 | 2800 | 97.6 | Plus |
Pu-RA | 1793 | CG9441-RA | 175..480 | 8..313 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21179292..21179597 | 8..313 | 1530 | 100 | Plus |
2R | 25286936 | 2R | 21179937..21180147 | 312..522 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 21181419..21181585 | 522..688 | 835 | 100 | Plus |
2R | 25286936 | 2R | 21181644..21181761 | 688..807 | 455 | 95.8 | Plus |
2R | 25286936 | 2R | 21181842..21181962 | 815..933 | 255 | 91.9 | Plus |
Blast to na_te.dros performed 2014-11-27 21:01:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 2713..2743 | 918..948 | 110 | 83.9 | Plus |
UFO10813.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:05 Download gff for
UFO10813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RC | 168..1101 | 1..937 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:46 Download gff for
UFO10813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RC | 168..1101 | 1..937 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:06 Download gff for
UFO10813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pu-RC | 168..1101 | 1..937 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:06 Download gff for
UFO10813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21181420..21181585 | 523..688 | 100 | -> | Plus |
2R | 21181645..21181761 | 689..807 | 95 | -> | Plus |
2R | 21181836..21181965 | 808..937 | 91 | == | Plus |
2R | 21179286..21179596 | 1..312 | 99 | -> | Plus |
2R | 21179938..21180147 | 313..522 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:46 Download gff for
UFO10813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17066791..17067101 | 1..312 | 99 | -> | Plus |
arm_2R | 17067443..17067652 | 313..522 | 100 | -> | Plus |
arm_2R | 17068925..17069090 | 523..688 | 100 | -> | Plus |
arm_2R | 17069150..17069266 | 689..807 | 95 | -> | Plus |
arm_2R | 17069341..17069470 | 808..937 | 91 | == | Plus |