UFO10814.5prime Sequence
1160 bp (1033 high quality bases) assembled on 2012-01-19
> UFO10814.5prime
CAGTCGACATGGTCAAAGAGGTTAATATGTCGGGGACGCAAATGTCTGCC
TTCCTGAGAAAGTATCTAGCCGACGAGGACAAAAAAATTCGTGCGCAATT
CAAAGAAAGCGATCCTAACAACAAATTGATTCTATGGATGCACGAAAAAA
CGAGAATAACCGAGGAGGACTTGGCACGCCCATACACCGAGGACGAGGTA
AAGGAGCTTTGTCTACGCACCAAAGTGAAGGTTGATATGACCGCTTGGAA
TTGTCTGTGGGAAGCCAAAAAGAGGTTTGAAGCAAAAGGACGTTTTGTGA
ACAAGTCTGAGAGATTCATCAACCGAATGTATATGAAAGCGGTGCGCAGA
AAGATGGTCCAACCGTATCCGGAGGAGTTTGTGGCCCAGCGAAGAGAAAT
AGTTGCAGCCGAGACTAAGAAGCAGAACATCAGCCGATTGGATAGATGGC
AAAAGAAAAAGAGTCAAAACCTATCAGCACCAGAATCCTCTCCAGACGCT
CATGCATCTTCTAATGACGCGGTGCAGAGCCACGAGGACCAAGCAAACAC
AAATCTTAGTTCACTGTCTCAAATGAACTTTCAAGTGGAAGCGATGGCTC
CGCCAGGCGTGTCGTCATCTGATCTTAGCGGCATCGGAGACGATGAGGAC
GAACAGCAGCAGTCAGGATTTCAGGATGAGAACATCAACCGTCCAGAGAC
AGAGATTAATGAGAATTCGGTGAGATGTGATCCAATTTATTTAGGAAGGA
TGCGGACTGGATGTATAAATTCGCAAGCAAATAACAGTTTCCGGAATACG
GAGTCTGATCCGGACTACTATATGTTTGGCACCCAATTGAGCACATTAGT
ACGACCCACGTCGACTCAAGAGCCTGACGATCAGGTAAACTGTCCAGAGA
CAGAGATGATGAGAGCTGGGTAAGTTGTGATCAAATTAATTCGGAAAGCT
TGTCGATTGACCGTCATGATCGAGACTATCACTTTCAAATACGATCTGGC
GATCGACGTCACCTCATAGCGCAGCTTTCTAGACATCGCGTGGCGCCGGG
CCAGGTAGTGGCTAATCATATCTAATCTATCCATATCCAACTAGCTAGGA
AATCTGCATAGACTATGCTGATTCCACAATAAAAGGCCCGGCGGCACCGA
GCGTTCTGGA
UFO10814.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cav-RE | 1776 | CG6219-RE | 640..1662 | 9..1016 | 4740 | 98.3 | Plus |
| cav-RB | 1226 | CG6219-RB | 96..1112 | 15..1016 | 4695 | 98.2 | Plus |
| cav-RA | 1520 | CG6219-RA | 396..1406 | 21..1016 | 4680 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24222535..24223343 | 152..959 | 3965 | 99.6 | Plus |
| 3R | 32079331 | 3R | 24222337..24222474 | 15..152 | 675 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:01:17 has no hits.
UFO10814.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:06 Download gff for
UFO10814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cav-RE | 594..1636 | 1..1029 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:47 Download gff for
UFO10814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cav-RE | 633..1675 | 1..1029 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:07 Download gff for
UFO10814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cav-RE | 633..1675 | 1..1029 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:07 Download gff for
UFO10814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24222536..24223414 | 153..1016 | 98 | == | Plus |
| 3R | 24222337..24222474 | 15..152 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:47 Download gff for
UFO10814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20048059..20048196 | 15..152 | 99 | -> | Plus |
| arm_3R | 20048258..20049136 | 153..1016 | 98 | == | Plus |
