UFO10815.5prime Sequence
1139 bp (1021 high quality bases) assembled on 2012-01-19
> UFO10815.5prime
CAGTCGACATGGATTCAAGCCAGTCCCGCAAAAACGGTTTCTTGCTGCAC
TTACCACTCGAAACGAAGAGGAATCCATCTAACCCTAATACTCCGTTAAG
TAATCTTCTGAATCTCACGGACTTCCACTACTTGCTGGCCAGTAATGTGT
GTCGAAAGGCAAAAAGAGAACTCTTAGCCGTTTTAATAGTTACTTCGTAT
GCCGGACACGATGCCTTGCGATCAGCTCACCGACAGGCAATTCCCCAAAG
CAAACTGGAAGAAATGGGCCTGCGAAGAGTTTTTCTCTTGGCAGCCCTGC
CTTCAAGAGAGCATTTTATAAGCCAGGATCAACTGGCCAGCGAACAGAAT
CGTTTCGGGGACCTTCTCCAGGGGAATTTCATCGAGGACTATCGCAATCT
GAGCTACAAACACGTAATGGGATTAAAGTGGGTCTCTGAGGAGTGCAAAA
AGCAGGCCAAGTTTATCATTAAACTGGATGATGACATCATTTACGATGTG
TTTCATCTGCGCAGGTATTTAGAGACCCTCGAGGTGCGCGAACCTGGACT
GGCCACATCAAGTACTTTGTTATCTGGCTACGTACTGGATGCCAAGCCCC
CCATTCGCCTTCGAGCCAATAAGTGGTACGTTAGCAAAAAGGAGTATCCT
CAGGCTTTATATCCCGCCTATTTGTCGGGCTGGCTTTACGTGACCAACGT
GCCAACAGCCGAGAGGATTGTGGCGGAGGCGGAGAGGATGTCATTTTTTT
GGATCGATGACACCTGGTTGACTGGAGTAGTAAGGACTCGTTTGGGTATT
CCCCTTGAGCGTCACAACGACTGGTTTTCTGCCAATGCAGAGTTCATCGA
CTGCTGTGTGCGAGATCTCAAGAAGCACAACTATGAGTGCGAGTACTCCG
TGGGACCCAATGGCGGTGACGACCGACTACTGGTGGAATTCTGCATAACG
TTGAGAAGTGCTACTTGATGATGGGTCAAACGGCCGGTTGGTAGTCGCCT
CAAAGAAGACCTGTTTAGCGGCGGCAAATCTCGACCCCCTTAACATGGTT
TTAGTGAATAAGCGTGGCGACTCAGCAGCTTCTAACATACGTGGCGCGCG
GCCCAGTATGGTCTATCATATCATATTCATATCTATCCC
UFO10815.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3038-RB | 1630 | CG3038-RB | 176..1248 | 9..1075 | 5060 | 98.6 | Plus |
| CG3038-RA | 1731 | CG3038-RA | 279..1349 | 11..1075 | 5050 | 98.6 | Plus |
| CG3038-RC | 1751 | CG3038-RC | 696..1262 | 515..1075 | 2530 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 244469..245350 | 1052..174 | 4060 | 98.6 | Minus |
| X | 23542271 | X | 245412..245578 | 177..11 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:01:21 has no hits.
UFO10815.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:06 Download gff for
UFO10815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3038-RB | 154..1224 | 1..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:50 Download gff for
UFO10815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3038-RB | 168..1238 | 1..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:10 Download gff for
UFO10815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3038-RB | 168..1238 | 1..1065 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:10 Download gff for
UFO10815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 244453..245346 | 178..1065 | 98 | <- | Minus |
| X | 245412..245578 | 11..177 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:50 Download gff for
UFO10815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 138486..139379 | 178..1065 | 98 | <- | Minus |
| arm_X | 139445..139611 | 11..177 | 100 | | Minus |
