UFO10816.5prime Sequence
1097 bp (954 high quality bases) assembled on 2012-01-19
> UFO10816.5prime
CAGTCGACATGTCACTGACCAAGTCGTCGTCGAGAAAGGATCTAACCGAG
CAGAATCAGTATCAGAATCAGAATGAGAATCAGAATCAGCCCAAATCGAC
GACCATAGTCAAGTATGAGAAGTCGTCGTGCCTCTTCTGCAACGAATGGT
TCGATGCCCAGACATTCACGGAACACCTGATCCACTGCGGCCAGGTGCTG
GAGGAGTGTCCCAACGGCTGTCAGGCCTTCATTCCACGCATCCGTATGCG
ATCCCATCTGAAGGAGTGTCCACGCAACCAGCACAATCTGAGCAATCAGC
AACGCATGAGTGTCAGCATGGATCGCCTGGATAGGCAGTCGGATCAGCGT
CTCCTGGTCATTGAACAGGACGTGGGCACCATTCGGTCCGTTCTCAACGA
GGAGATACGACAGCGTTTGCATCTCATTACCGATGTGGGCAACATACGGA
AGCAGAACCAGGTCGTCGAGGACTGGACCCGCGAAACCGAGAAGGCAATG
GACGATCTGCGTCGCCAGATGGAGGAGGAAACCAATCGGAAGGCATTCGC
CATCGAACAGAACCAGCTGGATGTCCAGTACTGCTGTGATATCACACAGT
CCTTGAAAGAGCAAGTGGAGTCCAGGCTGGATGAGGCCCAAAAGCTGGTC
AATCAGCTCTCGGCGGACGTGACCTATCACCAGAATCAGCTAAACGACAA
TATCCTAAAGCTGGAGGAGCTGATCTTTGAGAACGAGCGGCTCAACAGGG
AGAAGTTCTTTCAGATCGAGGAGTTTCTGCAGCAGATCAATGAGGACATC
AAAACAAAGCTGGGCAACAGTGACTATGTGACGTCAAAGCAGCACATTGA
CTATGAGTGAGATGTGAGACATGTGTGCGAACGGAGACGTGCGTAATGAT
CGAGCACTCACAGACATGCAGATATTCGATTGAGACCAATGCATGCAGAC
GATGCATGTCAGATATAGGACCTGATGGCGCTCAGATACTCGAAACTGAA
GTCAGCATACGACATCTCAGGCATGTTCCATAGCTGCAGCTACGCTGATA
CTGATGCAGACTGAGCGACTGTCCGTGACGTCTCGGATACTGCGCTG
UFO10816.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Traf-like-RA | 2285 | CG4394-RA | 379..1266 | 9..886 | 4200 | 98.9 | Plus |
| Traf-like-RE | 2275 | CG4394-RE | 379..1256 | 9..886 | 3670 | 95.4 | Plus |
| Traf-like-RD | 1877 | CG4394-RD | 132..858 | 170..886 | 3395 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16415656..16416085 | 170..599 | 2150 | 100 | Plus |
| X | 23542271 | X | 16416153..16416397 | 598..842 | 1225 | 100 | Plus |
| X | 23542271 | X | 16415424..16415586 | 9..171 | 815 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 21:01:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-C | 11124 | TART-C TARTC 11124bp | 8767..8857 | 708..798 | 113 | 58.2 | Plus |
UFO10816.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:07 Download gff for
UFO10816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf-like-RA | 332..1194 | 1..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:52 Download gff for
UFO10816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf-like-RA | 372..1234 | 1..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:11 Download gff for
UFO10816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Traf-like-RA | 372..1234 | 1..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:11 Download gff for
UFO10816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16416155..16416419 | 600..860 | 98 | == | Plus |
| X | 16415417..16415585 | 1..170 | 97 | -> | Plus |
| X | 16415657..16416085 | 171..599 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:52 Download gff for
UFO10816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16309450..16309618 | 1..170 | 97 | -> | Plus |
| arm_X | 16309690..16310118 | 171..599 | 100 | -> | Plus |
| arm_X | 16310188..16310452 | 600..860 | 98 | == | Plus |
