UFO10817.5prime Sequence
1154 bp (1037 high quality bases) assembled on 2012-01-19
> UFO10817.5prime
CAGTCGACATGCTCAAAGCCGCAAAGATCCCCTTGTTCTTCGCCCTTTTG
GGTGCTGTGTGTATCCAGGCCGTCGTGGTTGGTCCCCAGCCATTGCATAA
TAACAACAGGAACGGCTACCGCTACAATGGCCCCGCCCACAAGTATCTCC
CATCGGAGGAGTCGCACTCGCACGGCAGCCCCTTGGATTCGAGTCACCAG
CATGATCAGCAGGGCCCCAGTAATGCCTACAACTCACATCATTACCCAGC
ACAGGAGCAACATGGCCAGGGAGCGCCGGAGCACGACCATCAGCAGAAGG
AGGTTGACTCCTGGCAAACGGCTCTTTCCCAGCAGCAACACGAGAGCTTC
GGAAACCAGCAAAATCATCAGAACGCCTACAATGAAGGACCTGTGTACCA
GCACTATCAGGGATTTAACCACCAACAACATTATGGATTAAGCCAACAGC
AACAGCATGAAAGCTACGGGCAGGAACACTATCAACAGAGCCCCAACCAG
CTGCAACACCATCAGTCCCAACACGCAAACGAATATGCCTACGAACCAGC
TCATTTCCAGCAGCAACAGCAGCATCACGAAATTCAGGGTCACAAGCAGC
ATCAGCAGAGGAAAGAGCACTGGAACTTCGTTCAAGAGCAGCAACCCCAA
AATCACGAACCCTGGCAATCTTCGCATGGCTTCCAACAGCACCAGCAGCA
GCATTCCAATCGCTTTGAGTCACAGCTTCCGCTGCGGGAAGACCTTTGGC
AACCCATTCGTGAGCTGGACCTAGAGAAGCTTCCTTCGGCTGAGGCGCAC
GCCAGTAGCCACAAGACAGTTGCAGCTCCTGGACGAGATGTAAAGCTCGT
GCCCAGTTACACGCTCTCCAGCGACTTTGAGCACGACCGCTTCATCGGAC
TGGATAGTACGGACACTCGTCTGCTGACCCAATCTCTGCCAGATGCCTAC
CGGAAACAGCTGTTCTCCTCGCCACCAGAACCATCGTCTTAGCCCAAGGG
ACATAACCAGCACACAGGCCCGGATCCGCAGCCTATGGGTGTTCCCACGA
CCATCCTTGCCGAATCCACATCCGATTTCTGCAATGCAGTCCCACTCGGT
GTAGCCTGCCCTCCACCGTTACCTACTCACACGGGAATGGACCAGGACAC
AAGG
UFO10817.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11381-RA | 1603 | CG11381-RA | 86..1229 | 9..1149 | 5285 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1203932..1205010 | 25..1098 | 5025 | 98.8 | Plus |
Blast to na_te.dros performed 2014-11-27 21:01:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6920 | 437..645 | 234 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7002 | 418..703 | 212 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6964 | 475..721 | 212 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2464 | 558..703 | 202 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6861 | 555..703 | 199 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2544 | 444..654 | 198 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6918 | 496..703 | 198 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2514 | 496..702 | 196 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2616 | 483..783 | 193 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2687 | 418..734 | 193 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2372..2510 | 470..608 | 190 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..7012 | 330..581 | 182 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..7013 | 397..660 | 181 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2608 | 507..813 | 180 | 54.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6944 | 397..603 | 179 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2473 | 449..619 | 172 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6951 | 355..577 | 168 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2647..2945 | 418..710 | 167 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6897 | 558..703 | 167 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6646..6880 | 475..704 | 165 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2440 | 563..703 | 142 | 58.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1006..1150 | 445..581 | 139 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1373..1600 | 402..620 | 136 | 55 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1161 | 545..655 | 130 | 64.3 | Plus |
UFO10817.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:08 Download gff for
UFO10817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11381-RA | 76..1230 | 1..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:55 Download gff for
UFO10817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11381-RA | 78..1232 | 1..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:14 Download gff for
UFO10817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11381-RA | 78..1232 | 1..1154 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:14 Download gff for
UFO10817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1203934..1205062 | 27..1154 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:55 Download gff for
UFO10817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1097967..1099095 | 27..1154 | 97 | | Plus |
