UFO10818.5prime Sequence
1165 bp (1035 high quality bases) assembled on 2012-01-19
> UFO10818.5prime
CAGTCGACATGATCGCCGTGCTGTTGGACATATTCTGGATCCCCATCGGG
GGCTTCCTCTCATTTCTCATATTTATTTCCGCCATAAACAAATCAATCGG
CGTCCGAAAAGCGTACGTGAACCTCCTCCTAAGGATATTCGAGTATGGTC
GAGTTAGTATAGAGACAGCATCCAAAGAAAACCAACACATTCAAAATCCC
AAGACTGACGACAAACAGGGAGTGCAACTAGTGGACGACGCCGATTCCAA
AGAAGGCACCAATGGAGCCACATTGATTACCAGGGACGCGGTACTCCTGC
CCCAGCCACAGGAGCCCGCTCCAGAGAAGCCAGTTTCCTCCACAAAGGAT
GAAATCAATTTCGATTTTGAGAAATGCCTGGACTACGTAAAGTCTGGCGT
GGAGGCCATCATCGAGGACGATGTTACGTCGCGCTTCGAGGCGGAGGAGC
TCAAGAGCTGGAACATGCTGACACGCACCAATAGGCACTACGAGTTCATT
TCCTGGAAAATCACCTCCATCTGGGTGTTCGGCTTCTTCATCCGCTACGT
CATCCTGATGCCCCTCCGGGTATTGGTATGCTTCGTTGGTGTTTTATTTG
CAGTTTTATCAAGCTCCATTGTGGCTTGTTTATCTTTTCGATTTGTACGG
CTTTCTCTAGCGAGCTTGTCATTCAAAATTACGTTCCGCCTTATTTCAAG
TTCTATGTCCTCCTTTATCAAGTTCCACAATAAGCAATATAAGCCCACAG
TCTCTGGGTTCTGTGTAGCCAACCACACCTCTCTGTTGGATGTGGCTATA
TTATCGACCGATTGTACCTACTCTTTGATTGCCAACGCCATGGCGGCTTT
TTGGGGGTGCTGCAACGAGCTCTGGCCCGCGCATCTCCCCACATTTGGTT
TGAGCGCGGCGAGGCCAAGGATCGTCATTTGGTGCCGAGCGACTGAAGCA
GCACGTGTCTAATCCGAACAACCCACCGATCCCTATCTTCCCGGAGGGAA
CTTGCATCAACACACGTCGGTCATGCAGTTCAGAAGGCAGCTTCGATGGT
TGGCGGGCGTCCATCTACCGGTGCCATTAAATACGATCCGTGATCGCGAC
CCCCTTCTGGAACAGCCGAAATACTCCGATGATGCAGTATCTGTACATGG
AATGAAATGACCCCC
UFO10818.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3209-RC | 1751 | CG3209-RC | 151..1296 | 9..1149 | 5215 | 97.7 | Plus |
| CG3209-RD | 1985 | CG3209-RD | 151..969 | 9..827 | 4050 | 99.6 | Plus |
| CG3209-RB | 1660 | CG3209-RB | 151..734 | 9..592 | 2920 | 100 | Plus |
| CG3209-RD | 1985 | CG3209-RD | 1192..1530 | 816..1149 | 1195 | 92.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24069998..24070244 | 346..592 | 1235 | 100 | Plus |
| 2R | 25286936 | 2R | 24070768..24071004 | 591..827 | 1140 | 98.7 | Plus |
| 2R | 25286936 | 2R | 24069737..24069943 | 142..348 | 1035 | 100 | Plus |
| 2R | 25286936 | 2R | 24072709..24072912 | 831..1032 | 890 | 98 | Plus |
| 2R | 25286936 | 2R | 24069200..24069334 | 9..143 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:01:35 has no hits.
UFO10818.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:08 Download gff for
UFO10818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3209-RC | 286..1445 | 3..1162 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:57 Download gff for
UFO10818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3209-RC | 146..1305 | 3..1162 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:16 Download gff for
UFO10818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3209-RC | 146..1305 | 3..1162 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:16 Download gff for
UFO10818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24069195..24069334 | 3..143 | 97 | -> | Plus |
| 2R | 24069739..24069942 | 144..347 | 100 | -> | Plus |
| 2R | 24070000..24070242 | 348..590 | 100 | -> | Plus |
| 2R | 24070768..24071004 | 591..827 | 98 | -> | Plus |
| 2R | 24072705..24072961 | 828..1080 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:57 Download gff for
UFO10818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19956718..19956857 | 3..143 | 97 | -> | Plus |
| arm_2R | 19957262..19957465 | 144..347 | 100 | -> | Plus |
| arm_2R | 19957523..19957765 | 348..590 | 100 | -> | Plus |
| arm_2R | 19958291..19958527 | 591..827 | 98 | -> | Plus |
| arm_2R | 19960228..19960484 | 828..1080 | 95 | -> | Plus |
