UFO10819.5prime Sequence
944 bp (816 high quality bases) assembled on 2012-01-19
> UFO10819.5prime
CAGTCGACATGGATTTCAATTTTGATACTGTGACTCCCTGTTCGACCATG
TCGTCCTACTATAACTTTAAGATGGCGAGTGGTGGGCGTGGATTTGGGAT
GTCCCATTCTCTGCCATCCGGAATGGATACAGAATTTTCATTTCCAAGTT
CATCGTCGCGTCGTGGTTACAATGATTTCCCCGGCTGCGGCGGCAGCGGC
GGAAATGGTGGGAGTGCCAACAATTTAGGGGGCGGCAACATGTGCCACCT
GCCGCCGATGGCCAGCAACAACTCGCTGAATAATCTCTGCGGATTGTCGC
TGGGCAGCGGTGGTAGTGATGATCTCATGAACGATCCTCGGGCAAGCAAC
ACCAACCTGATTGTCAACTACTTGCCCCAGGACATGACCGATCGCGAGCT
GTACGCCCTATTCAGAGCCATTGGACCCATCAACACGTGCAGAATCATGC
GAGACTATAAGACTGGCTACAGTTTTGGTTATGCTTTCGTGGACTTCACA
TCGGAAATGGACTCGCAGCGTGCTATTAAAGTGCTGAATGGCATCACAGT
GCGCAACAAGCGGCTTAAGGTTTCCTATGCACGTCCCGGCGGAGAATCGA
TCAAGGACACCAATCTGGATGTGACCAATCTGCCGCGTACCATAACCGAC
GATCAGCTGGACACGATCTTCGGCAAGTACGGTTCCATTGTGCAGAAGAA
CATCTTGCGTGACAAGCTCACAGGTCGTCCTCGTGGTGTGGCTTGTCGGA
CACAGCTGAGAGCCAGAGCATCGGTACACTATACCAGCGTAACGTGCGCG
TGTAGCTGAGAGGCATAGCAAGCTGTCGAGCCCCCACCGCAGCCTATACA
GACTACCCTCACACTAGATCATATTGCCAGAAAAAACAGTGCACGTATTT
ACACTACCACTAGTACAACAGTGTAGTAGTTTTGTGTGTTACTA
UFO10819.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sxl-RR | 3738 | CG43770-RR | 117..850 | 9..742 | 3655 | 99.9 | Plus |
| Sxl-RC | 1515 | CG43770-RC | 117..850 | 9..742 | 3655 | 99.9 | Plus |
| Sxl-RO | 5964 | CG43770-RO | 117..850 | 9..742 | 3655 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7085619..7085955 | 461..125 | 1685 | 100 | Minus |
| X | 23542271 | X | 7085167..7085341 | 742..568 | 860 | 99.4 | Minus |
| X | 23542271 | X | 7085408..7085519 | 571..460 | 560 | 100 | Minus |
| X | 23542271 | X | 7092697..7092767 | 79..9 | 355 | 100 | Minus |
| X | 23542271 | X | 7087613..7087661 | 126..78 | 245 | 100 | Minus |
| X | 23542271 | X | 1371663..1371769 | 350..456 | 205 | 79.4 | Plus |
Blast to na_te.dros performed 2014-11-27 21:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 690..729 | 216..177 | 110 | 75 | Minus |
UFO10819.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:09 Download gff for
UFO10819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sxl-RC | 111..858 | 9..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:59 Download gff for
UFO10819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sxl-RO | 117..864 | 9..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:17 Download gff for
UFO10819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sxl-RO | 117..864 | 9..752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:17 Download gff for
UFO10819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7085157..7085339 | 570..749 | 97 | <- | Minus |
| X | 7085410..7085517 | 462..569 | 100 | <- | Minus |
| X | 7085619..7085954 | 126..461 | 100 | <- | Minus |
| X | 7087614..7087659 | 80..125 | 100 | <- | Minus |
| X | 7092697..7092767 | 9..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:59 Download gff for
UFO10819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6979190..6979372 | 570..749 | 97 | <- | Minus |
| arm_X | 6979443..6979550 | 462..569 | 100 | <- | Minus |
| arm_X | 6979652..6979987 | 126..461 | 100 | <- | Minus |
| arm_X | 6981647..6981692 | 80..125 | 100 | <- | Minus |
| arm_X | 6986730..6986800 | 9..79 | 100 | | Minus |
