UFO10821.5prime Sequence
1090 bp (1055 high quality bases) assembled on 2012-01-19
> UFO10821.5prime
CAGTCGACATGGCCAAGTTGCTCCTTGTGATCGTTGGTGTGGCGGCCCTA
GTGGCAGCGGGACAGGCGGCCGGTGGCTCCACCGAAAAGATGCAGAGGCT
TATCGCCGAGGAGCAAAACAAGTGCGCCAGTGGCCAAGACTCGATGGCCT
GCATCAAAGAGCGGGCCATGCGGTTTGTGGACAACGTGATGAGCAAAGAC
AGCTTCCAGGTTTCCAACCTGGAAGTCCGCTCCAATGGAGAGAAGACCAC
GCCTATCAACGAAGCTCGTGCCAGCAGTGCCGACGGATTTCTGGACGCCA
TTGAGAACTATATCCGTGGACACGACGTGAGCATGGACTTGCCCTTGGCC
GATGCCAAGGTCACCGTCTCGGCCCGCAACCTGGTTAACAATCAGCTGAG
CCTGAACCTCCAGCTGAACGGCGACGATGGCGATGAGGGCACCGATGTCG
AAGCCAGGGGCAAGAAACACCGTCTCCGCAAGCTGGCCATGCCCATCCTG
GTGCTCATCCTGCTGAAGGCCATCACAGTGATCCCCATGGCCATTGGCAT
CCTGAAGATCAAGGCCTTCAACGCCCTGGCCCTGGGCTTCTTCTCCTTCA
TTGTCTCGGTTGGTTTGGCCATTTTCCAATTGTGCAAAAAGATTGCTCAT
GATCACCATCACACCGCCCACATCACCGCCCATGGTCCTTGGGACGGCCG
CACCTTTAGCTCCGTTCCTGCCCCCGTTGTCGAGCAGCCCCAGAAGTTGG
GGCAAGCCCTGTCTTACCAGGCCTACGCTGCAAGCTTTCTAGACTATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAAGCGCCCGGCGGCAACCGAGCGTTCTGACCAATCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCACAGGAGTTAAAGCGAGCT
CGATATCAAATTACGCCCCGGCCCTGCCAACCATCGCAGTACTGTTGTAA
TTCATTAAGCATTCCTGCCGAACTTGAAAGCCATCCAAAC
UFO10821.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi19-RB | 1111 | CG15189-RB | 82..852 | 9..779 | 3840 | 99.9 | Plus |
| Osi19-RA | 1138 | CG15189-RA | 82..539 | 9..466 | 2275 | 99.8 | Plus |
| Osi19-RA | 1138 | CG15189-RA | 558..879 | 458..779 | 1595 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6335920..6336178 | 208..466 | 1280 | 99.6 | Plus |
| 3R | 32079331 | 3R | 6335443..6335645 | 9..211 | 1015 | 100 | Plus |
| 3R | 32079331 | 3R | 6336279..6336461 | 459..641 | 915 | 100 | Plus |
| 3R | 32079331 | 3R | 6336798..6336937 | 640..779 | 685 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:01:45 has no hits.
UFO10821.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:10 Download gff for
UFO10821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi19-RB | 73..850 | 1..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:01 Download gff for
UFO10821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi19-RB | 75..852 | 1..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:21 Download gff for
UFO10821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi19-RB | 75..852 | 1..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:21 Download gff for
UFO10821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6335922..6336171 | 210..459 | 100 | -> | Plus |
| 3R | 6336280..6336461 | 460..641 | 100 | -> | Plus |
| 3R | 6336800..6336937 | 642..779 | 99 | == | Plus |
| 3R | 6335436..6335643 | 1..209 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:01 Download gff for
UFO10821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2161158..2161365 | 1..209 | 98 | -> | Plus |
| arm_3R | 2161644..2161893 | 210..459 | 100 | -> | Plus |
| arm_3R | 2162002..2162183 | 460..641 | 100 | -> | Plus |
| arm_3R | 2162522..2162659 | 642..779 | 99 | == | Plus |
