UFO10822.5prime Sequence
1058 bp (990 high quality bases) assembled on 2012-01-19
> UFO10822.5prime
CAGTCGACATGTGGCAGACACTATCAACTTTTAGCACATCACTCAGAGCA
GCAGCAGCAGCAGTGGCAGCACAACCAGCAGCAACTTGCAACTGTAGCTG
CAAGCTGGAAAACGCGGAAATGCACAGTCACATGTTGCCATCAGCAGAGA
TTGCGACAACGGCAGTGCGTAGGTGTTGCTGTCGCACAAAAATCACCCGC
AGCAACAGCAGCAACTATAGTTGCAACTACGGCAGCAACGTGATCCAGTG
GCTACTGCTACTGTGCCTTTTCTGTGATTTTGGCCAGGCCGCGCTGCGTG
ACGTAAATCTGCTGGTGGAGCCTCCGGCGGTGCGAAGGGGTCAGTCTGTG
GCCCTGCGGTGCGATTACCAATTGGTGGAGGCGCCCCTGTATTCCATTAA
GTTTTACCGCGGCCAGATGGAATTCTACCGCTACACACCAGGCGAGTATC
CGCCAACCAAGGTCTTTCAGTTCCCCGGCATCAGAGTGGACGAGAACGGC
TCGAATGCCACCACCGTGCTCATCCGCAACGTTAGCTTCGGCCTGTCCGG
ACAATTCAGCTGCGAGGTTACGGCGGATGCCCCGCTCTATTCCACGGCCA
CAGCCTTCGCCCAGATGCAAGTTGTGGAATTTCCGGAGAAGCGACCGCAG
CTTTTTACGGAACACTCGCGATACGAACCAGGAGATGTTTTGCGTGCAAA
TTGCAGTACTTTGCCATCTCGGCCTCGAGCTGATCTTCGTTTCACCATCA
ACAATATTCCCGTCAGCACGGAGGAAACGCAGTACATTCGAACGGTTGAC
AGCCTGATTGCATCCCGGCTCAGTCTGAAGCTGCAGCTGCAGCGACTCAC
TTTGTGGCTGGGCTCAGTGCCCATGGAAATGGGAACGGGAATGGTAATGG
CAATGGAAATGGCAACGGCATGGCCTGCGACGCACTGCACCTGGGTGGCG
GCGGCGGAGCCGCTGAGCCGAGACTCATCCTGCGTTGTACGCGCAATTGT
GATTTCTATCAAGAGTACAAGGAAATAGAGCTGGGCCACACCGCAAAAGA
TCCGTTGC
UFO10822.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-IIb-RC | 2442 | CG4135-RC | 721..1780 | 9..1058 | 4915 | 98.3 | Plus |
| beat-IIb-RA | 2070 | CG4135-RA | 340..1408 | 9..1058 | 4800 | 97.4 | Plus |
| beat-IIa-RB | 2829 | CG14334-RB | 983..1365 | 324..706 | 420 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17247271..17247538 | 276..9 | 1340 | 100 | Minus |
| 3R | 32079331 | 3R | 17239692..17239908 | 492..276 | 1085 | 100 | Minus |
| 3R | 32079331 | 3R | 17233251..17233547 | 1049..762 | 910 | 93.3 | Minus |
| 3R | 32079331 | 3R | 17238911..17239047 | 763..627 | 685 | 100 | Minus |
| 3R | 32079331 | 3R | 17239478..17239613 | 627..492 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 17332505..17332662 | 481..324 | 220 | 75.9 | Minus |
Blast to na_te.dros performed 2014-11-27 21:01:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6708..6938 | 21..258 | 201 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2567 | 37..268 | 185 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2272..2421 | 95..239 | 171 | 60.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1041..1151 | 118..230 | 163 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6832 | 126..250 | 142 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2635..2880 | 33..267 | 141 | 58.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1101..1148 | 192..239 | 141 | 77.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2367 | 184..239 | 136 | 71.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1096..1136 | 199..239 | 133 | 80.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6767 | 185..239 | 131 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6829 | 139..238 | 131 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6842 | 185..239 | 131 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2604..2826 | 19..239 | 128 | 53.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6788 | 192..239 | 123 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6809 | 192..239 | 123 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6776 | 184..239 | 120 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6797 | 185..239 | 115 | 70.9 | Plus |
UFO10822.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:03 Download gff for
UFO10822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIb-RB | 331..1398 | 1..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:39 Download gff for
UFO10822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIb-RC | 713..1780 | 1..1058 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:02 Download gff for
UFO10822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIb-RC | 713..1780 | 1..1058 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:02 Download gff for
UFO10822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17238913..17239046 | 628..761 | 100 | <- | Minus |
| 3R | 17239478..17239613 | 492..627 | 100 | <- | Minus |
| 3R | 17239693..17239907 | 277..491 | 100 | <- | Minus |
| 3R | 17233241..17233547 | 762..1058 | 94 | <- | Minus |
| 3R | 17247271..17247546 | 1..276 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:39 Download gff for
UFO10822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13065200..13065335 | 492..627 | 100 | <- | Minus |
| arm_3R | 13065415..13065629 | 277..491 | 100 | <- | Minus |
| arm_3R | 13072993..13073268 | 1..276 | 98 | | Minus |
| arm_3R | 13058963..13059269 | 762..1058 | 94 | <- | Minus |
| arm_3R | 13064635..13064768 | 628..761 | 100 | <- | Minus |
