UFO10823.5prime Sequence
1018 bp (1018 high quality bases) assembled on 2012-01-19
> UFO10823.5prime
CAGTCGACATGTCGAGGTTGAGCAGAGCGCTGCAGCTTACAGATATAGAT
GATTTTATTACGCCCTCACAGCCCGTGCAAATAGATAAGGCAAGGTCAAA
GACTGGGGCAAAGATAAAGATAAAAGGTGACGGCTGCTTTGAGGAATCAG
AGAGTGGAAATCTAAAACTTAATAAAGTTGATATTTCTCTGCAAGACTGT
CTTGCGTGTTCTGGTTGCATCACTTCAGCTGAAGAAGTCCTTATCACGCA
GCAGAGCCGAGAAGAGTTGCTTAAGGTCCTTCAAGAGAATTCAAAGAATA
AGGCCTCTGAAGACTGGGATAACGTGCGTACGATCGTGTTCACCCTTGCC
ACCCAGCCTATACTAAGCTTAGCCTATCGCTATCAGATAGGTGTGGAGGA
TGCTGCCCGTCATCTTAATGGGTATTTTCGCAGTTTGGGTGCCGACTATG
TTTTGTCCACTAAGGTGGCGGACGATATTGCGCTGCTCGAATGTCGTCAA
GAATTTGTAGATAGGTACCGCGAAAATGAGAACTTGACCATGCTTAGCTC
CTCTTGTCCGGGGTGGGTTTGTTACGCGGAGAAAACACACGGAAACTTCT
TATTGCCTTACGTTTCCACGACCCGATCTCCTCAGCAAATAATGGGAGTG
CTTGTGAAGCAAATCCTTGCCGATAAGATGAATGTTCCTGCGTCACGAAT
CTACCATGTGACCGTGATGCCTTGCTACGACAAGAAGCTTGAGGCCTCTC
GAGAGGACTTTTTCAGCAAGGCAAATAACTCACGCGACGTAGACTGTGTA
ATCACTTCAGTTGAGTGGAACAGTTGCTTAGTGAGGCTCAGCAGCCGCTG
TCGCAGTACGATCTCCTTGATTTAGACTGGCCATGGTCTATGTACGCCAG
AATTCATGGTATGGGCTCACGAGAGACGCTATCTGGCGGTTACGCAGAAC
ACATATTTAAGTACGCCGCGAACATATTTCAACGAAGATTTAAAAACAGA
GTTGGAATTCAACAGCTC
UFO10823.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17683-RC | 1785 | CG17683-RC | 88..1105 | 8..1018 | 4900 | 99.2 | Plus |
| CG17683-RA | 1696 | CG17683-RA | 88..1117 | 8..1018 | 4770 | 98.1 | Plus |
| CG17683-RE | 1823 | CG17683-RE | 213..1143 | 70..1018 | 4205 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4131320..4131979 | 151..810 | 3300 | 100 | Plus |
| 2R | 25286936 | 2R | 4132042..4132244 | 815..1012 | 750 | 97 | Plus |
| 2R | 25286936 | 2R | 4131186..4131268 | 70..152 | 415 | 100 | Plus |
| 2R | 25286936 | 2R | 4131061..4131124 | 8..71 | 320 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 21:01:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 2352..2448 | 230..135 | 122 | 59.8 | Minus |
UFO10823.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:04 Download gff for
UFO10823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RE | 69..132 | 8..71 | 100 | -> | Plus |
| CG17683-RE | 196..1149 | 72..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:42 Download gff for
UFO10823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RC | 88..1105 | 8..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:03 Download gff for
UFO10823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RC | 88..1105 | 8..1018 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:03 Download gff for
UFO10823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4132037..4132251 | 811..1018 | 96 | | Plus |
| 2R | 4131061..4131124 | 8..71 | 100 | -> | Plus |
| 2R | 4131188..4131268 | 72..152 | 100 | -> | Plus |
| 2R | 4131322..4131979 | 153..810 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:42 Download gff for
UFO10823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18566..18629 | 8..71 | 100 | -> | Plus |
| arm_2R | 18693..18773 | 72..152 | 100 | -> | Plus |
| arm_2R | 18827..19484 | 153..810 | 100 | -> | Plus |
| arm_2R | 19542..19756 | 811..1018 | 96 | | Plus |
