UFO10824.5prime Sequence
995 bp (990 high quality bases) assembled on 2012-01-19
> UFO10824.5prime
CAGTCGACATGATCCAAAATGCCTTGTTAGTAAGCGGCAAACTGAGACAT
TTGCTATCCTGTTCTATCGGGCGAAATTCGACTAGAAGCAGCAGCACAGC
GAAGTCGTTGGATGCCGGCACCCAAAAGGAAGTGCGGCACCATGAGAATC
ACGCCTCGGAGTGGTGGAATCAAAATGGAACCATGGGTGCTCTACATGCC
CTGAATGAGATTAGGGTTCCCTTTATCAGAGATGGCATCGTTTCGCGTGG
CACTGTGAAGCCAGGTTACGTAAATACCACCAAAGTGTTGTTGGGTCAAA
ATATTCTGGAGGTCGGATGTGGCGGAGGATTGCTTACGGAACACTTGGCG
CGCCTGGGTGCCCAGGTGGCTGGCATAGATCTTGGCGAGAAGTTAATAGA
AGCTGCTCGCGAGCATCTCAAATGCTCCAGTCCGGAGTTGGCCAGCAATG
TGGTGTACAAAATTGAGCCGGTGGATCAGCATGCCAAGGCCAATTGCGAA
TGCTATGATGCGGTGATAGTGTCTGAAGTTCTGGAGCACGTCAAAGATAA
AGTGTCCCTGCTGGAGGCCAGTGTACGCAGCCTAAAGCCTGGAGGATCCA
TCTTTATCACCACTTTGAACAAAACCATACCCAGTTGGTTCGGTGGCGTG
TTACTCAGCGAGTATGTTCTCAATCTGGTGCCCAGGGGAACGCACCACTG
GGACAAAATGATTTCGCCCTTGGACGTTCAGCGCATCTTGGATACGGTGA
ACTGTCAGACGGTGTTGGTAAATGGAAGCACCTACGACTTTTGGAGCAAC
ACCTGGCGATGGATCAACAACAACCAGATGTGCTACGCCTTGCAGGCGGT
GAAACAAGCACAGCGCGAGTACAATGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
UFO10824.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9249-RB | 991 | CG9249-RB | 49..915 | 9..875 | 4290 | 99.7 | Plus |
| CG9249-RA | 1065 | CG9249-RA | 49..786 | 9..746 | 3660 | 99.7 | Plus |
| CG9249-RA | 1065 | CG9249-RA | 850..978 | 747..875 | 645 | 100 | Plus |
| Mpp6-RA | 1335 | CG9250-RA | 1170..1298 | 875..747 | 645 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21157712..21158245 | 746..213 | 2670 | 100 | Minus |
| 2L | 23513712 | 2L | 21158303..21158481 | 215..37 | 895 | 100 | Minus |
| 2L | 23513712 | 2L | 21157520..21157648 | 875..747 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:01:10 has no hits.
UFO10824.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:04 Download gff for
UFO10824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9249-RB | 26..898 | 9..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:08:44 Download gff for
UFO10824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9249-RB | 49..921 | 9..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:05 Download gff for
UFO10824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9249-RB | 49..921 | 9..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:05 Download gff for
UFO10824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21157513..21157647 | 748..886 | 95 | <- | Minus |
| 2L | 21157711..21158243 | 215..747 | 99 | <- | Minus |
| 2L | 21158304..21158480 | 38..214 | 100 | <- | Minus |
| 2L | 21158535..21158563 | 9..37 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:08:44 Download gff for
UFO10824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21157513..21157647 | 748..886 | 95 | <- | Minus |
| arm_2L | 21157711..21158243 | 215..747 | 99 | <- | Minus |
| arm_2L | 21158304..21158480 | 38..214 | 100 | <- | Minus |
| arm_2L | 21158535..21158563 | 9..37 | 93 | | Minus |
