UFO10825.5prime Sequence
1131 bp (1018 high quality bases) assembled on 2012-01-19
> UFO10825.5prime
CAGTCGACATGGCTGGAAGAGGTGGTTATGAACACGCTAGCGGATTCGGT
GGGGATCGGGCATCCAAGCAGTTGCCCACGGAACCGCCGTTCATCGCATT
TGTCGGCAATTTGCCGCAAGGCCTTGTGCAGGGCGATGTGATCAAAATAT
TCCAGGACTTTGAGGTGAAGTACGTGCGGCTGGTGAAGGACCGGGAAACG
GATCAGTTCAAAGGCTTCTGCTACGTCGAATTCGAGACGCTGGACAATCT
GGAGCGGGCGCTAGAGTGCGATGGTCGGATCAAACTGGACGATCTGTCGG
CGCCGCTAAGGATCGACATTGCCGATCGGAGAAAAAATGATCGCCCTGGT
GGCGGTGTTGGCGGCGGCAACGGCGGCATGACCCGCGGCGACGGCGGCAG
AGACGGTTTCCAGAAGCGCGGCCCACCTCGCCAGGGCGGCAGCAGTCAGT
CCTACAGCCGGGGAGGTCCTGGCACTGGCGGCGGCGGTCGGGAGGGCGGC
GGCGGTTCGGGTAATCGCGGCGATAGTAGAGATCGGCCGGCAAATCGTGG
TCGGTACGGCAGTTTCAATAACGACGATCGACCATTCGAGCGTAACCAGG
ATCGGGATCGCGGTCAGCGGGAAGGCAGCTATGGCAACCAGTCGCGCGAC
GGCGATCGCTACAACAACTTCAACCGGCACCGCGACCGCGAGCGCACCCA
CTACAATCCCAACCAGCAGAGCGAACGTCCCAGTGGCGGCATGACCGGCC
TTGGCGGCGGCTCCGGCGGATCAGGAGGCCTAGGCGTTGGCGGTGGTTCC
TCAATGGGCGCCATTGACGACAATGAGCGGCCACGTCTGCAGCTGAGCCA
CGGACCATTGCCGCGCCCATTAACGCGGTGGCAGAGACCAAGCAATCGGC
CTCGATCTTTGGCAACGCCAAGCCGCGCGAGAGAGCTGAGGAGCTGCAGC
AGATGTCAATCACAACGGCGAAAACGGCAAGCTTCTAGACCATCGTTTGG
CGCGCGGGCCAGTTAGGTGCCATATGTATCATATCATATCATAATCACAC
CTAGCCTAGGAGATGCTGTCATGACTTAGGGCTTGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGCGTTCCTG
UFO10825.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbp2-RB | 3895 | CG4429-RB | 32..1005 | 7..975 | 4730 | 99.4 | Plus |
| Rbp2-RA | 3898 | CG4429-RA | 32..1008 | 7..975 | 4690 | 99.1 | Plus |
| Rbp2-RE | 2816 | CG4429-RE | 344..1283 | 41..975 | 4560 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16449875..16450179 | 39..343 | 1525 | 100 | Plus |
| X | 23542271 | X | 16451273..16451559 | 530..816 | 1435 | 100 | Plus |
| X | 23542271 | X | 16450313..16450501 | 343..531 | 945 | 100 | Plus |
| X | 23542271 | X | 16451918..16452082 | 816..975 | 560 | 96.4 | Plus |
| 3R | 32079331 | 3R | 30726475..30726649 | 69..243 | 350 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:01:56 has no hits.
UFO10825.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:13 Download gff for
UFO10825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp2-RB | 20..993 | 7..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:10 Download gff for
UFO10825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp2-RB | 32..1005 | 7..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:29 Download gff for
UFO10825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp2-RB | 32..1005 | 7..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:29 Download gff for
UFO10825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16448696..16448729 | 7..40 | 100 | -> | Plus |
| X | 16449877..16450179 | 41..343 | 100 | -> | Plus |
| X | 16450314..16450501 | 344..531 | 100 | -> | Plus |
| X | 16451275..16451559 | 532..816 | 100 | -> | Plus |
| X | 16451919..16452078 | 817..971 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:10 Download gff for
UFO10825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16342729..16342762 | 7..40 | 100 | -> | Plus |
| arm_X | 16343910..16344212 | 41..343 | 100 | -> | Plus |
| arm_X | 16344347..16344534 | 344..531 | 100 | -> | Plus |
| arm_X | 16345308..16345592 | 532..816 | 100 | -> | Plus |
| arm_X | 16345952..16346111 | 817..971 | 96 | == | Plus |
