UFO10828.5prime Sequence
1163 bp (1020 high quality bases) assembled on 2012-01-19
> UFO10828.5prime
CAGTCGACATGCATCCGGAACGCTACGCCAGTCCAAATCCATTGATACCA
TTGGTAATCGCAGGCGCCCTGCTCTTCTCGATGCTCTCGCAGGTGAGCGG
CTACTCGGGACGAATTCCACCGGATGCAGATAATCCCGGGAAGTGCATGT
ACCGCGGTGACGTCCTGGAACTGGGTGTCAACAATGGCATCGCTCCCTGC
CAGCGACTGACTTGCAACAAGGATGGATCAATACTTATCGAGGGTTGCGG
CAAACTGCGCATCGAAAACTGCAACCGAGGCGAGCGAATCTCTCCGGGTG
AACCCTTTCCGGAATGCTGCAAGCTGAGATACAAGTGCAAGCAAATCGGA
GCGGCACCCTACTACATCGAGCGGAATACGGCGGAGAAGGTCGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACA
GGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATC
GCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCAC
AAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCT
TGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCAT
ATTGGCCACGCTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTG
AGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTT
TCACCGTAACACCGCCACATCTTGCGAATATATGTGTAGAACTGCCGGAA
ATCGTCGTTGTATTCACTCCAGAGCGATGAAACGTTTCAGTTTGCTCAGG
AAAACGGTGTACAAGGGTGAACAACTATCCCATATCACAGCTCACGGTCT
TTCATTGCCCATAACGAAATTCCCGGATGGGACATGTCAGGCGGGCAAGA
ATGTGGAATAAAGGCCGGAATAACCTTGTGGCTAGTTTTCTTTACGGGTC
CTTAAAAGGCCGT
UFO10828.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15203-RB | 900 | CG15203-RB | 61..444 | 9..392 | 1920 | 100 | Plus |
| CG15203-RA | 610 | CG15203-RA | 53..436 | 9..392 | 1920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11067775..11067923 | 244..392 | 745 | 100 | Plus |
| X | 23542271 | X | 11066612..11066732 | 9..129 | 605 | 100 | Plus |
| X | 23542271 | X | 11066813..11066930 | 127..244 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:02:02 has no hits.
UFO10828.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:14 Download gff for
UFO10828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15203-RA | 25..416 | 1..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:15 Download gff for
UFO10828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15203-RA | 45..436 | 1..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:33 Download gff for
UFO10828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15203-RA | 45..436 | 1..392 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:33 Download gff for
UFO10828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11066604..11066732 | 1..129 | 97 | -> | Plus |
| X | 11066816..11066930 | 130..244 | 100 | -> | Plus |
| X | 11067776..11067923 | 245..392 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:15 Download gff for
UFO10828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10960637..10960765 | 1..129 | 97 | -> | Plus |
| arm_X | 10960849..10960963 | 130..244 | 100 | -> | Plus |
| arm_X | 10961809..10961956 | 245..392 | 100 | == | Plus |
