UFO10830.5prime Sequence
1073 bp (970 high quality bases) assembled on 2012-01-19
> UFO10830.5prime
CAGTCGACATGTCGCTGCTGCTCACCGGAAACAGTGCCTCCCTTTCCGAG
GAGGAGCTCGACGAGTACTCCGATGGAACCGTCAAATTGCGCAACTCGAA
CATTGAGCTCATGGACCAGGATATCCTCTATCACCTGGCCTTGGGCAGCG
AGAGCCACGACCTGCAGGAGATGTTTGGCGACGTTAAGTTCGTTTGCATG
GGCGGCACACCAAAGCGCATGGAGAATTTTGCCCATTTCATAATGAACGA
GATTGGCTACAAGTTGCCAGCGGGCACCCAGCTGCAGGACATCAGCGCCT
ATTCGTATCGCTACTCCATGTACAAAGTGGGACCGGTGCTGTGCGTCAGC
CATGGCATGGGTACGCCCTCGGTCAGCATCCTGATGCATGAGATGATCAA
GCTGATGTACCACGCCAAGTGCAAGGATCCCGTCTTCATCAGGATAGGAA
CGTGCGGAGGAATTGGCGTCGACGGCGGCACCGTCATCATCACCGAAGAT
GCCCTCGATGGGCAGCTGAGGAACTCCCATGAGTTTACCATTCTCGGCAA
GACCATCCATCGTCCTGCCAAGCTGGACAAAAAGCTGGCCCGTGAGCTAA
AGTCCCTGGCCAGTCCCGATGATCCGTACGATACCATTATTGGCAAGACG
CTGTGCACCAACGATTTCTACGAGGGCCAGGGTCGTTTGGACGGCGCATT
CTGTGATTTCAGCGAGAACGAGAAGATGGCCTATCTGGAGAAGCTGCGCG
AGAACGGCGTGCTCAACATCGAGATGGAGAGCACCATCTTTGCGGCCCTG
ACCCACCATGCCGGCATCAAGGCAGCGGTGGTGTGTGTCGCCCTGCTGAA
CCGCCTCATGGGGATCAGGTCAACGCGCCCAAGGAGGTCATGAACGAGTG
GCAAGCGCGTCCGCAGATCCTCGTGTCCGTATCCAGCTACGCATGCGTGA
GCTTCGACAGTCTAGCCCGCTCACGACGTAGCAGATCACTTGCGCGTGAT
AATATCTCACGATCACGTAAGTAAGACCATACGAACCTTGATACGTAGCT
AGATATAGTAGATATGTATAGGG
UFO10830.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6330-RB | 2075 | CG6330-RB | 299..1218 | 9..927 | 4560 | 99.8 | Plus |
CG6330-RA | 1541 | CG6330-RA | 252..1115 | 65..927 | 4280 | 99.8 | Plus |
CG3788-RB | 1758 | CG3788-RB | 928..1104 | 314..490 | 345 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26950638..26951009 | 907..537 | 1795 | 99.5 | Minus |
3R | 32079331 | 3R | 26951072..26951428 | 536..180 | 1755 | 99.4 | Minus |
3R | 32079331 | 3R | 26951775..26951898 | 188..65 | 620 | 100 | Minus |
2R | 25286936 | 2R | 22932746..22932922 | 490..314 | 345 | 79.7 | Minus |
3R | 32079331 | 3R | 26956517..26956575 | 67..9 | 295 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 21:02:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tabor | 7345 | Tabor TABOR 7345bp | 200..283 | 192..110 | 111 | 60.7 | Minus |
Tabor | 7345 | Tabor TABOR 7345bp | 7039..7122 | 192..110 | 111 | 60.7 | Minus |
UFO10830.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:15 Download gff for
UFO10830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-RB | 288..1221 | 1..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:17 Download gff for
UFO10830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-RB | 292..1225 | 1..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:36 Download gff for
UFO10830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6330-RB | 292..1225 | 1..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:36 Download gff for
UFO10830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26950638..26951009 | 537..907 | 99 | <- | Minus |
3R | 26950542..26950568 | 908..932 | 92 | <- | Minus |
3R | 26951072..26951419 | 189..536 | 100 | <- | Minus |
3R | 26951775..26951898 | 65..188 | 100 | <- | Minus |
3R | 26956520..26956581 | 1..64 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:17 Download gff for
UFO10830.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22776264..22776290 | 908..932 | 92 | <- | Minus |
arm_3R | 22776360..22776731 | 537..907 | 99 | <- | Minus |
arm_3R | 22776794..22777141 | 189..536 | 100 | <- | Minus |
arm_3R | 22777497..22777620 | 65..188 | 100 | <- | Minus |
arm_3R | 22782242..22782303 | 1..64 | 93 | | Minus |