UFO10836.5prime Sequence
991 bp (988 high quality bases) assembled on 2012-01-19
> UFO10836.5prime
CAGTCGACATGTACAAGAACATCGACAATGAGTCCTCCACGACCATGTTT
GAAATGTACTCCTCCTCGGATAGGTTCATACGTTCGGACATGGCCGACGT
ACCCGTGCAGCAGGCGGCAGGATCGACGCTTCCGTTGGTAATCTCTCGGA
AAAAAGGCGACGACTCCGAGGATGGCAACTACAATCCGTTCGAGCACCGC
AAGGTGGAGCATCCGACATCGGATCTCGAGACATTTGTACACTTGCTAAA
GGGATCGCTTGGCTCCGGAATATTGGCCATGCCAATGGCCTTCTCCCACG
CTGGATTGTGGTTCGGTTTGGTGGCCACCTTCGCGGTGGGCACCTTGTGC
ACCTACTGCGTCCACATTCTGGTCAAGTGCGCCCACATCCTGTGCCGACG
TCGTAAAATCCCGATGATGGGATTCGCCGATGTGGCGGAACAGGCTTTCC
TCGACGGACCACCTGCCCTGAATCGCTGGTCACGCTTCATCCGGTTCATG
GTCAATACGTTTCTGGTTATCGATTTGCTGGGCTGCTGCTGCATCTATCT
GGTTTTCGTGGCCACCAATGTGGAGCAGGTCGTGCGGGTGTATATGGAAA
CGGAGCTGAGCATTAGAGTTTGGATCATGATCGTGACGGCACCGCTAATC
TTTATGTGCCTGGTACGCAACCTGAAGTTCCTCACGCCCTTCTCGATGAT
AGCCAACATCCTGATGTTCGTGGGCATCGTGATCACCTTCATCTATATGC
ACTCCGATATTCCTGCACCCGTGGAACGTCCTGAATTGTGAGTGTAACCG
AATGGCCATTGTTCTTCGGCACCGTGATCTTTGCTCTGGAGGGCATCGGT
GTAGTATGTCCCTGGAAACGACATGAAGAACCCAGCCACTTCATCGGTTG
CCATCTGTCCTGACTTCGGCATGGGTCTGGTGATTGCCCTCTACACTCTG
GTGGATTCTTTGGGCTCCTGAGTACGGCCGGAAACGCAGTC
UFO10836.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43693-RC | 2163 | CG43693-RC | 92..1081 | 9..989 | 4650 | 98.6 | Plus |
| CG43693-RG | 2434 | CG43693-RG | 428..1352 | 74..989 | 4325 | 98.5 | Plus |
| CG43693-RB | 2399 | CG43693-RB | 393..1317 | 74..989 | 4325 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11037677..11038434 | 971..221 | 3380 | 98.5 | Minus |
| 3L | 28110227 | 3L | 11039617..11039829 | 221..9 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:01:53 has no hits.
UFO10836.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:12 Download gff for
UFO10836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6327-RC | 84..1083 | 1..991 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:08 Download gff for
UFO10836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43693-RC | 84..1083 | 1..991 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:27 Download gff for
UFO10836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43693-RC | 84..1083 | 1..991 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:27 Download gff for
UFO10836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11037655..11038434 | 221..991 | 98 | <- | Minus |
| 3L | 11039618..11039833 | 1..220 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:08 Download gff for
UFO10836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11030755..11031534 | 221..991 | 98 | <- | Minus |
| arm_3L | 11032718..11032933 | 1..220 | 98 | | Minus |
