UFO10838.5prime Sequence
1156 bp (1044 high quality bases) assembled on 2012-01-19
> UFO10838.5prime
CAGTCGACATGTTCGCATTGGCCTTGACGGTGGCGGCCTTGGTGCTTGCC
GGCCAGCAGGAGGTGTGCCGCGCACAGGTCTCCATCCACACGGACGCCAA
CTCGAACTCCTACAGCCTGAAGACGCCCGGAGTGCAGCAGACCTTCACCC
GGTACTACGGAGGAGCGGCCAAGAACCAGCAGGTGGAGCAGCCGCAGCTG
CAGCAGCCGCAGGAGCAGGAGCAGTTGCAAACTCCCACGCAATTTGGTGG
ATTCTCGCCGTCGGGACAGCAGTATCCTGCCGTGTACTCGCAGCCAGGAT
TCCGGGCCGATGGTAAGCTGAAGGTCACGCCCAACTCGCTGCTCCAGCAG
CAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCA
ACAGCAGCAACAGCAGCTCCTGGCGCAGCAGCAGCAGCAACTCCTGGCCG
CCACATCGCCGCAGGTAGCAGCTGCATCCGGACCAGGAGTGGGCGTTAGC
GGTGGCGTGGTCAACATGCCCAGCTATGCGGACCAGATGCACGCCGCCTT
CCTCGATTATCAGCGCCAACGAGCCGAGTTCGAGCAGCAGCAGCAGCACC
TGCTGCAGAAGCTCTACCACTACTATCCCGATGTATCCGGCGGCCTAACA
TCACCGGCTCATCAGATTCAACCCCAAACCCCCCAGATAGCTGCTCCCGC
CGATGTGGGAGGCGCTCCGGCGGGCGTGGCAGCACAGAAACGCAGCTGGC
CGCTTCGCCTACCGTCGGCCGCAGTTCAGCAACAATGGCCTGCAGCCCGA
GCGCCTTGCATCCGGATCCATTGTGCCCGGAGGTCCAGTAAGAGGAGGTC
CAGTTGGAGTCATCCCGGGAGGAGTGATCGGATCAGCGCCTTTGCGCTCC
AACAGTCTGGGAGGGGGAGCAAGTGGAGACTTCTACTCCACGCAACAGCA
CATGGGCTTCATGCAGCAGCAGCAGCAGGACGTGGCTCCGTGACCAGCAG
CAGTCGGTTGCCCATCAGTCGCCACCAGCCAGTTGGCGCCCACCACCTGC
AGAGCTATGGATGCGTTCATGTCCTCGTGCTGGATCCCACTACAGCAATC
GCGACGTTTCAAGTGAGCTTCCAGCGCATCCACTACGCTCGCAGCTTCTA
GAAGAT
UFO10838.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32548-RB | 1475 | CG32548-RB | 173..1301 | 8..1121 | 5175 | 98.1 | Plus |
| CG32548-RC | 1382 | CG32548-RC | 300..1208 | 228..1121 | 4075 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18435969..18436802 | 1060..227 | 3950 | 99.3 | Minus |
| X | 23542271 | X | 18440190..18440409 | 227..8 | 1100 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:02:22 has no hits.
UFO10838.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:19 Download gff for
UFO10838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32548-RB | 164..1236 | 1..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:26 Download gff for
UFO10838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32548-RB | 164..1236 | 1..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:44 Download gff for
UFO10838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32548-RB | 164..1236 | 1..1068 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:44 Download gff for
UFO10838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18435958..18436801 | 228..1068 | 98 | <- | Minus |
| X | 18440190..18440416 | 1..227 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:26 Download gff for
UFO10838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18329991..18330834 | 228..1068 | 98 | <- | Minus |
| arm_X | 18334223..18334449 | 1..227 | 98 | | Minus |
