UFO10841.5prime Sequence
1111 bp (1021 high quality bases) assembled on 2012-01-19
> UFO10841.5prime
CAGTCGACATGAACAGTGCCGTACCGCCCGGCGTGTTGGGACTACCCTAT
CGATTTTCGGATGAGCGTACGGTCAAGTTCGTAGAGCTTTACGGCCGGGA
ACCTTGTCTCTGGAACAAGCGACCATATTTGCGACGAGCTCGAAGCGCCG
CCTATCGGCGAATTCAGTCCGGGATCAATGCTGATATTGAACCATATGAG
TCAGGTCTTACCATCCAGGGCGTAAAGATGAAGATCAAGAATCTTCGTAC
TGGGTACCACCAGGAGCTAAAGAAGATCCGAACTATTCCGGGATATCAGC
CAAAGACGCCCTGGTTTGCCCCACTTCACGGGTTTTTGGCAGAGTTCTTG
GACACGAATGAGTTGGAAACATCAATTCCTCAACTAAAGCGCCTACAGAT
TCGACTTACCAGACTGAAGCCGATTAAGATTCAGACGGAGATTAAGCCAG
ATCCCGATGACTTGTCAGTCCCCGATAGGCCGTTGGATGCTACACCCTCT
TCCTTATTTACCGTTCTGCCAGCACCTATGCCCGTGGAGGAGCCTCCCAC
TCCACCGCCTTCCGTGCCCAAGATCGGAGACATCATCTCACCAGTACATC
CAGACCCAGCGCCTGTTCCGATAGCAGGGAACTGTCCTCTGTCGACAGCC
TGCTCCATTTCTGAAAAAAGTGAGGTCTTGGGATTGGGCCTGGGAGTATC
GGCAGCTGGACGGACGAATGGAGTTGGCCTTGGAGTTGAAATGCGAGGCG
AGGACGAATTCACCTACTTCGGGTTGAGCGTTGCAGCGCAAACCCGTAAT
ATGCCATTGGCCAGTGCCATGCTAATGCAGTCGAAAATCCAGTATATGCT
CTCTATGGAGCGTCGTAGATTAACGGTCATCCTGGCGATATGGACATATT
TCTAACTAAAAACGCAAGCTTTCTAGACCATTCGTTTGGCGGCGCGGGCC
CAGGTAAGTGGTCATATCATATCATTCTCATATCATATCACACTAGCCTA
GGAGATCTGGTCATGACTAGTGCTTGGATTCCTCACCAATAAAAACGCCG
GCGGCACGGGCGCGTTCTGAACATCGATGGATTGAGTCATACTGATTATA
GACGGATCAGC
UFO10841.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30403-RB | 1268 | CG30403-RB | 145..1051 | 8..913 | 4495 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21710112..21710670 | 913..356 | 2730 | 99.6 | Minus |
| 2R | 25286936 | 2R | 21711121..21711469 | 356..8 | 1745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:02:27 has no hits.
UFO10841.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:19 Download gff for
UFO10841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30403-RB | 135..1056 | 1..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:28 Download gff for
UFO10841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30403-RB | 139..1060 | 1..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:46 Download gff for
UFO10841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30403-RB | 139..1060 | 1..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:46 Download gff for
UFO10841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21710112..21710669 | 357..913 | 99 | <- | Minus |
| 2R | 21711121..21711473 | 1..356 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:28 Download gff for
UFO10841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17597617..17598174 | 357..913 | 99 | <- | Minus |
| arm_2R | 17598626..17598978 | 1..356 | 98 | | Minus |
