UFO10842.5prime Sequence
1161 bp (1011 high quality bases) assembled on 2012-01-19
> UFO10842.5prime
CAGTCGACATGACAAACCGATGCGCTTGCTTCGCCTTGGCCTTCCTCCTC
TTCTGCCTCTTGGCCATCTCGAGCATCGAGGCAGCTCCGATGCCCAGGTA
CCAATCCAATGGAGGATACGGTGGCGCTGGCTATAACGAACTGGAGGAGG
TGCCCGACGACCTACTCATGGAACTGATGACTCGCTTTGGACGCACCATC
ATACGGGCTCGAAACGATCTGGAGAATTCCAAACGAACCGTGGACTTTGG
CTTGGCCCGGGGATATTCGGGTACCCAGGAGGCGAAACATCGCATGGGTC
TGGCTGCAGCCAACTTTGCCGGAGGACCCGGTCGGAGGCGACGATCCGAG
ACCGATGTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACT
CACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAG
GGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGATATATGT
GTAGAAACTGCCGGAAATCGTCGGGGTATTCACTCAGAGGGATGAAAACG
TTTCAGTCTGCTCATGGAAAACGGTGGTAACAGGGGGAACCACTATTCCA
ATATCACCAGCTCACGTCTTCATGGCATACGAAATCGGATGGAGCATCAT
CAGGGCGGGCAAGAATGTGGAATAAGGGCGGATAAACCGGGGCTATTTTT
CTTTACGGGTCTTGAAGGGCGGTAATATCCAGCTGGAACGGGCTGTGTTA
GTAGTACATTG
UFO10842.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dh31-RC | 1295 | CG13094-RC | 143..493 | 9..359 | 1755 | 100 | Plus |
Dh31-RA | 1292 | CG13094-RA | 143..490 | 9..359 | 1700 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8492670..8492802 | 359..227 | 665 | 100 | Minus |
2L | 23513712 | 2L | 8492967..8493092 | 226..101 | 630 | 100 | Minus |
2L | 23513712 | 2L | 8493744..8493835 | 100..9 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:02:31 has no hits.
UFO10842.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:20 Download gff for
UFO10842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh31-RC | 143..497 | 9..364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:30 Download gff for
UFO10842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh31-RC | 143..497 | 9..364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:47 Download gff for
UFO10842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh31-RC | 143..497 | 9..364 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:47 Download gff for
UFO10842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8492670..8492802 | 227..359 | 100 | <- | Minus |
2L | 8492967..8493092 | 101..226 | 100 | <- | Minus |
2L | 8493744..8493835 | 9..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:30 Download gff for
UFO10842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8492670..8492802 | 227..359 | 100 | <- | Minus |
arm_2L | 8492967..8493092 | 101..226 | 100 | <- | Minus |
arm_2L | 8493744..8493835 | 9..100 | 100 | | Minus |