UFO10844.5prime Sequence
1153 bp (1028 high quality bases) assembled on 2012-01-19
> UFO10844.5prime
CAGTCGACATGGGCAATGCCGGCTACACTTGCATACGCCGCACATTCTGC
TGGCTCAACATCATTCTATGGTTATGTAGCTGTGCGTTTTTAGGAGCGGG
ACTCTGGTTGCGACTGAGCTACGCGGGATACGCCACTTTGCTGCCCCAGC
ACGCAGGTCTGAGTGCGGACACCATCTTCATGGGCATCGGGGGCACCGGA
TTTGTGGTCAGCTTCTTTGGCTGCTGCGGCGCCTGGGTGCAATCCCGCTG
TCTCCTGGTATTGTACTTTATGCTGATTGTAATGCTGTTCATGAGCGAGT
TCCTGGTTGGCTCCATCGCCTTTCTCTTCCGCGGCGGACTGGGACGGACT
TTGGCCAACGAGCTGCGCTTCGGGATCGAGCGGCATTATAACAGCAGCGA
TCGGGGATCTCTGGTGGCGCCTTCGGTGGCCTCCATTTGGGACAGCGTGC
AGCAGTCGTTCGAGTGTTGCGGCGTTTCCTCCTACGAGGATTGGTATGAC
ATTCAGTCGTGGCCAGGCAGGCGCTGGGTGCCAGAGTCCTGCTGCAGGAC
CCTCTACGACCAGCGCCAGGTGCTCACCGAAGGATCCGGCGACGGAATGA
TGCGTCCCGACTGCGGCAGATCTGGGAATCCGTCGCTGTGGTGGGACAAG
GGCTGTGCCCACTCGCTGCAGAGCTGGTTCACCGGCCAGCTGAACGTGGT
GGGCGCCGTGGGACTGGGCATCGCCTTTGTCCAGCTGTTCGGGCTGATCA
CCTCGATGCTGCTGTTCTGCACGGTGATGCACAAGCGGGCCTCGGACACC
TACAAGTCATACTCCCCGTCGATTGATCCTCAGACCCGCACCAGCAGTTG
GGAAGATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATATCATATCATATCATATCACACTAGCTAGAGATCTG
GTCAGACTAGTGCTTGATCTCACATAAAACGCCGCGCACGAGCGTTCTGA
ACAATCAGATGGAGTCTGAGTCATACTGACTTCACGATCAGCGGCGATCA
TACGCCGCTGCACATCGATACTGTGATCTACTCGCGATGACTCAAGGTAG
ACTGATCCCGGTCACTGCTGTAATGCATGAACGGCAAATGCATTGCCTAA
CAC
UFO10844.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp5D-RC | 1827 | CG4690-RC | 145..993 | 9..857 | 4215 | 99.8 | Plus |
| Tsp5D-RB | 1827 | CG4690-RB | 145..993 | 9..857 | 4215 | 99.8 | Plus |
| Tsp5D-RA | 1972 | CG4690-RA | 290..1138 | 9..857 | 4215 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6069965..6070204 | 857..618 | 1170 | 99.2 | Minus |
| X | 23542271 | X | 6070521..6070716 | 458..263 | 980 | 100 | Minus |
| X | 23542271 | X | 6070857..6071049 | 263..71 | 965 | 100 | Minus |
| X | 23542271 | X | 6070293..6070454 | 619..458 | 810 | 100 | Minus |
| X | 23542271 | X | 6071805..6071867 | 71..9 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:02:34 has no hits.
UFO10844.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:21 Download gff for
UFO10844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp5D-RB | 140..997 | 1..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:32 Download gff for
UFO10844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp5D-RA | 285..1142 | 1..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:48 Download gff for
UFO10844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp5D-RA | 285..1142 | 1..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:48 Download gff for
UFO10844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6069961..6070202 | 620..861 | 98 | <- | Minus |
| X | 6070293..6070453 | 459..619 | 100 | <- | Minus |
| X | 6070521..6070715 | 264..458 | 100 | <- | Minus |
| X | 6070857..6071048 | 72..263 | 100 | <- | Minus |
| X | 6071805..6071871 | 1..71 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:32 Download gff for
UFO10844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5963994..5964235 | 620..861 | 98 | <- | Minus |
| arm_X | 5964326..5964486 | 459..619 | 100 | <- | Minus |
| arm_X | 5964554..5964748 | 264..458 | 100 | <- | Minus |
| arm_X | 5964890..5965081 | 72..263 | 100 | <- | Minus |
| arm_X | 5965838..5965904 | 1..71 | 94 | | Minus |
