UFO10845.5prime Sequence
1116 bp (1048 high quality bases) assembled on 2012-01-19
> UFO10845.5prime
CAGTCGACATGGCCCTGTCCAAGATCGACACCGAGATCGAGCAGGTTGAC
CAGGAGAAGTACCTGCGTCAGGCCACTAGCTACTATCAGCCGCTGGAGAA
ACCCCTGAAATACGGACCGGAGGTGAATTCCCTATCGGACTTGGTGGCCG
CCCTTCACCGGGAATTCGAGTCGAACTATGTTAACATCGAGATGGTGAAT
CACCTTATGCTCAGCTACAAGTCCAATCCGCGGGAGTGGCGCAAATATGC
CAAGTTCGATCGTTACACCTACACGCGGAATCTCGTGGATGCTGGCAATG
GAAAGTTCAATCTGCTGATTCTGTGCTGGGGCGAAGGACACGGCTCCTCG
GTGCACGACCATGCCGATTCCCATTGCTTCATGAAGATGCTGAAGGGTGA
TCTGCGCGAGAAGCGCTACGAGTATCCCAATAGATCTGCCAGGGACAACG
GCCGGTCCCATCATCCCGATGGCGAGATCGATAGCCGAGAGCTGGTGGAG
ATTGGGGAGACACCAATCGCCGTCAATGATGTGGCCTACATAAATGACAA
TCTGGGTCTGCATCGCGTGGAGAACCCCAGCCATTCGGATACCTCTGTCT
CCCTTCACCTATACTGTCCACCCTTCGACACGTGCTCCGTGTTCCAGGAC
AACCTGAAGAAGACCACCGCCAAGGTCACCTTCTGGAGCAAATACGGCGT
GAGGACGAAGCAGACGAGCAGGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTACGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAACGAGCTCGATATC
AAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTATTCATTAGC
ATTCTGCCGACAGGAAGCCATCACAACGGCATGATGACCTGATCGCCAGC
GCATCATCACCTTGTCGGCTTGCGTATAATATTTGCCATGGTGGAAACGG
GGGGAAAAGTGTTTCA
UFO10845.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5493-RD | 1031 | CG5493-RD | 63..776 | 9..721 | 3545 | 99.9 | Plus |
| CG5493-RC | 1130 | CG5493-RC | 162..875 | 9..721 | 3545 | 99.9 | Plus |
| CG5493-RB | 1161 | CG5493-RB | 193..906 | 9..721 | 3545 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18617200..18617737 | 546..9 | 2690 | 100 | Minus |
| 2R | 25286936 | 2R | 18616955..18617123 | 714..546 | 845 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:02:38 has no hits.
UFO10845.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:21 Download gff for
UFO10845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5493-RA | 203..916 | 9..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:33 Download gff for
UFO10845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5493-RB | 193..906 | 9..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:51 Download gff for
UFO10845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5493-RB | 193..906 | 9..721 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:51 Download gff for
UFO10845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18616947..18617122 | 547..721 | 99 | <- | Minus |
| 2R | 18617200..18617737 | 9..546 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:33 Download gff for
UFO10845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14504452..14504627 | 547..721 | 99 | <- | Minus |
| arm_2R | 14504705..14505242 | 9..546 | 100 | | Minus |
