UFO10846.5prime Sequence
852 bp (775 high quality bases) assembled on 2012-01-19
> UFO10846.5prime
CAGTCGACATGTCGCCGAGAAGGAGCTTGCTGTGCTGCCTGCTGGTGAGC
AGCATCCTAGTGCTGCACCAGGCTCAGGCCAACATCGAGACAAACGATGT
GAATGACCCCAGTTACTACATGCTGCAGGGTGTGCGTGTGTATCCCAATG
ACCGACAGTGCGTCATGGTCGGAGGACTGTGTGTCGCGGAGTCGGACTGC
ATCGAACCCACCTCGAACAAGGGATTGTGTCCCACGAGTGCCGGAGAGGG
CGTGGAGTGCTGCTACGAACTGCCGGTCAGACCAGCGCCCTGTGCGGAAC
ACCTGGGACAGTGCATGGACCGATGCCACCAGAGGCTCCTGCGACCCGGT
TCGGATTGCAAGAATGGCCAAGTCTGCTGCGTCCTGATTGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATC
ATAATCATAATCATAATCACAACTAGCCTAAGAGATCCTGGTCATGACTA
GTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCT
GAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGT
GTGCAAGCGAGCTCGATATCAAATTACGCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTATGCATTCTGCCGACATGGAAGCCATCGCAAAC
AGCATGATGAACCTGAATCGCCAGCGGCATCAGCACTTGGCGCCTTGCGT
ATATATTTGCCCATGGTGAAAACGGGGGCTGAAAATTGCCCTATTGGCCA
CGTTTAAACCAACCTGGTGAAACTCACCCAGGGATTGGTGGAAACAAAAA
AT
UFO10846.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10433-RC | 1945 | CG10433-RC | 1166..1546 | 9..389 | 1905 | 100 | Plus |
| CG10433-RA | 945 | CG10433-RA | 166..546 | 9..389 | 1905 | 100 | Plus |
| CG10433-RB | 1112 | CG10433-RB | 166..439 | 9..283 | 1320 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21606468..21606617 | 270..121 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 21606075..21606193 | 389..271 | 595 | 100 | Minus |
| 2R | 25286936 | 2R | 21606681..21606792 | 120..9 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:02:08 has no hits.
UFO10846.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:16 Download gff for
UFO10846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10433-RA | 153..547 | 1..397 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:19 Download gff for
UFO10846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10433-RA | 157..551 | 1..397 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:38 Download gff for
UFO10846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10433-RA | 157..551 | 1..397 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:38 Download gff for
UFO10846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21606075..21606193 | 271..389 | 100 | <- | Minus |
| 2R | 21606468..21606617 | 121..270 | 100 | <- | Minus |
| 2R | 21606681..21606800 | 1..120 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:19 Download gff for
UFO10846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17493580..17493698 | 271..389 | 100 | <- | Minus |
| arm_2R | 17493973..17494122 | 121..270 | 100 | <- | Minus |
| arm_2R | 17494186..17494305 | 1..120 | 96 | | Minus |
