UFO10848.5prime Sequence
993 bp (984 high quality bases) assembled on 2012-01-19
> UFO10848.5prime
CAGTCGACATGCCGCGATATAGGGAGTGGGACTTGGCCTGCAAGGTGTAC
GTGGGAAACCTGGGCTCCTCGGCGTCCAAGCACGAGATAGAAGGCGCATT
TGCCAAATATGGACCCCTGCGAAACGTGTGGGTGGCCCGCAATCCACCAG
GTTTCGCCTTTGTCGAATTTGAGGATCGCCGTGACGCGGAAGACGCAACG
CGTGCCCTGGACGGAACACGCTGCTGCGGCACTAGGATTCGCGTAGAGAT
GTCTTCGGGTCGCTCGCGCGATCGCCGGCGCGGAGAAGGCGGCAGTAGTG
GTCGCTCTGGTTCCGGACGCTACAGGTCACGTTCGCCACGTCGCTCCCGA
TCGCCCCGCAGCCGCAGCTTCTCGCGCGATCGTCGAAGTCGCTCGGATTC
TCGGGATCGTCATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCAAGC
GGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAAC
GGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAA
ACTCACCCAGGATTGGCTGAGACGAAAACATATTCTCATAAACCCTTTAG
GGAAATAGGCAGGTTTCACCGTAACACGCCACATCTTGCGAATATTTGTG
TAGAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAAGGATG
UFO10848.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbp1-RA | 773 | CG17136-RA | 149..553 | 9..413 | 2025 | 100 | Plus |
| Rbp1-RD | 1528 | CG17136-RD | 149..466 | 9..326 | 1590 | 100 | Plus |
| Rbp1-like-RC | 1456 | CG1987-RC | 208..413 | 27..232 | 460 | 81.6 | Plus |
| Rbp1-RD | 1528 | CG17136-RD | 1218..1308 | 323..413 | 455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10784607..10784925 | 9..327 | 1595 | 100 | Plus |
| X | 23542271 | X | 13384465..13384670 | 232..27 | 460 | 81.6 | Minus |
| 3R | 32079331 | 3R | 10786155..10786245 | 323..413 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:02:15 has no hits.
UFO10848.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:17 Download gff for
UFO10848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp1-RA | 150..563 | 9..423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:22 Download gff for
UFO10848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp1-RA | 149..562 | 9..423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:40 Download gff for
UFO10848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp1-RA | 149..562 | 9..423 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:40 Download gff for
UFO10848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10784607..10784923 | 9..325 | 100 | -> | Plus |
| 3R | 10786158..10786245 | 326..413 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:22 Download gff for
UFO10848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6610329..6610645 | 9..325 | 100 | -> | Plus |
| arm_3R | 6611880..6611967 | 326..413 | 100 | == | Plus |
