UFO10851.5prime Sequence
1153 bp (1037 high quality bases) assembled on 2012-01-19
> UFO10851.5prime
CAGTCGACATGGGAGCTTTGTTTGGAAAAACCAGCAAAAAGACGGCTCCT
AGTCGGATCACCGACCAGGACAAGGCGGTTCTGCAATTGAAGCAACAGAG
GGATCGTCTGAAGCAGTACCAAAAACGCATCGAGACGCAGTTGGAGAATG
ATCGCCTCCTGGCAAGGAAGTGCCTACAGCAAGGTCGCAAGGACCGGGCC
AAGCTGCTGCTGCGCAAGAAGAAGTACCAGGAGAGTCTGCTGACCAATGC
CGACAAACAGCTGGAAAACCTGGAGAAGCTGGCTGCGGACATTGAGTTCG
CCCAGGTGGAGATGAAGGTGCTGGACGGCCTCAAAGCGGGCAATGCTGCT
CTGAAGAAGGTGCACGAAATGCTTGACATCGACGAAGTTGAGCGAATCAT
GGACGAGACACGCGAGGGCATCGAAAAGCAGCAGGAAATAGACGCCATAC
TGACGGATGTGCTGACCACGCAGGACGAGGAGGACGTTTTGGCCGAGCTG
GATGCCCTGGAGGCGGAGGAAGAGCAGCAGAAGGGTGCACAGCTGCCGGA
TGTGCCCACCGAAGATCTGCCCATTCCCGCTGAGATCGAGTCCGTCGAGG
AGCCGGCAAAGACCAAAGCAACCAAGAAAGTCCTGGTGGAGGCAGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GAGTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCAT
CGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGAAAGCCATCA
CAAACGGCATGATGAACCTGAATCGCAGCGCATCAGCACCTTGTCGCCTT
GCGTAAATAATTTGCCCATGTGAAACGGGGCGAAGAGTTGTCAAATGGCA
CGTTTAATTCAACTGTGAAACTCACCAGATTGCCTTGAACGAACCTATTC
CATGACCCTTAGATAGCAGTTCCCGTACACCGCCCCAATCTTTTGCAATA
TAT
UFO10851.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps20-RC | 899 | CG4071-RC | 150..786 | 8..644 | 3185 | 100 | Plus |
Vps20-RA | 772 | CG4071-RA | 23..659 | 8..644 | 3185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22608856..22609306 | 194..644 | 2255 | 100 | Plus |
2R | 25286936 | 2R | 22608683..22608793 | 83..193 | 555 | 100 | Plus |
2R | 25286936 | 2R | 22608543..22608618 | 8..83 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:02:49 has no hits.
UFO10851.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:23 Download gff for
UFO10851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps20-RA | 3..647 | 1..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:39 Download gff for
UFO10851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps20-RA | 15..659 | 1..644 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:54 Download gff for
UFO10851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps20-RA | 15..659 | 1..644 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:54 Download gff for
UFO10851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22608535..22608618 | 1..83 | 95 | -> | Plus |
2R | 22608684..22608793 | 84..193 | 100 | -> | Plus |
2R | 22608856..22609306 | 194..644 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:39 Download gff for
UFO10851.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18496040..18496123 | 1..83 | 95 | -> | Plus |
arm_2R | 18496189..18496298 | 84..193 | 100 | -> | Plus |
arm_2R | 18496361..18496811 | 194..644 | 100 | == | Plus |