UFO10852.5prime Sequence
1171 bp (1048 high quality bases) assembled on 2012-01-19
> UFO10852.5prime
CAGTCGACATGCTGAAGGGTTACAAGACGGATGAGGACAAGAAGGTGAAG
CGACTGTACCACCAACGCTATCGCACAGAGTGGGAGAAATATCCGGAGCT
CTCCAGCTGGCTGGCGTCTAGTAATGACGGTTACTCGGCGCACTGCAAGA
TCTGCGACATCAATGTCCTCGCCAGACTAGCGTCCATCAAGCAGCACCTC
GCAACGCGGAAACACCAGGAAAGTTTCAAGTACCACAACATTCTTGCCAA
GAATATGATTAAGGGTGAACTTGTCAAAGATGAGCATGACCCAGACTTGG
AGGCCTCCATAATTTCACCCAAAGCAAAGCCCAAAGCCAAATCAAAGACC
TATCCAAGGCAAAAGCCAAGGAGCAAAATGCAGCCAAAGATCAAGAACGA
CACGAAGGTGGAGAGCATGGAGGAGGAGACGGAGGAGGACGAAATCGCCT
CGAACGACTCAATCCTGGATGATTTACTCAGAACAGATCAGCCCTATCAA
GAGCAAGAATTTGAGGTTGAGAACGAGTTCCTCGAAGTACAACAGAATGA
AACAGATCTCCAGGACCAAGAGGTGGTCTACGAGGAAGAGATGATACAGC
TCAAGCCGGAAGATACGGAGATTAATAACGAATACCAAGTCGACGCGATG
ACGGAAGACACCATTATTAGTGAATTTGACTTGTTTGGCAAGAGTTTGGC
TCTGCAGCTGAACAACATGGACCTGGAGGACGCACTAATGTGCCAGGAGC
GTCTGCAGGTGGTCCTAACGGAATTTCGCCTGAAGGTGCTCAAGCGCAAG
AGAGAGCAAGCACGATCTTCGGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATTCAGATGGAGT
TCTGAGGTCATTACTGGATTTTATCAACAGGAGTCCAAGGCGAGCTCGAA
TATTCAAATTACGCCCCCGCCCTGCCACCTCATCGCCGTACTTTTTGTAA
TTTCATTAAGCATTCTGCCGACTTGCAAGCACATCACGACGGCATGATGA
ACTGAAATCGCCGAGCGGACT
UFO10852.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)05714-RB | 1082 | CG8886-RB | 190..1002 | 9..821 | 4065 | 100 | Plus |
| l(2)05714-RC | 1089 | CG8886-RC | 438..1009 | 250..821 | 2860 | 100 | Plus |
| l(2)05714-RA | 1049 | CG8886-RA | 398..969 | 250..821 | 2860 | 100 | Plus |
| l(2)05714-RC | 1089 | CG8886-RC | 230..439 | 9..218 | 1050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4970215..4970786 | 821..250 | 2860 | 100 | Minus |
| 2L | 23513712 | 2L | 4971054..4971296 | 251..9 | 1215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:02:52 has no hits.
UFO10852.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:24 Download gff for
UFO10852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)05714-RB | 150..977 | 1..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:40 Download gff for
UFO10852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)05714-RB | 150..977 | 1..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:55 Download gff for
UFO10852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)05714-RB | 182..1009 | 1..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:55 Download gff for
UFO10852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4970208..4970784 | 252..829 | 99 | <- | Minus |
| 2L | 4971054..4971300 | 1..251 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:40 Download gff for
UFO10852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4970208..4970784 | 252..829 | 99 | <- | Minus |
| arm_2L | 4971054..4971300 | 1..251 | 98 | | Minus |
