UFO10857.5prime Sequence
1124 bp (989 high quality bases) assembled on 2012-01-19
> UFO10857.5prime
CAGTCGACATGTGGTTCGCCATTTCTCTGTTTGCCATCTTGGCCGTTTGC
GGGTTGGCCGGCCGCAGGTGGGGTCGCTACCTCTATCTGCACTACGGCCG
CCACCTGCTGCCGCGCTCCCTCCTCTCGGCCAAGAACCGCGCGCCCACGC
CCCCTCTCTCGCCCACCAAGGACGACCAGAGCCTGGAGGCTCTCCTCGAC
GAGAGCGGCGAAATGCACGAAACGGTGCTGTCAATGAGCACAGATGAATA
TCGCAAGACCTCGCTCTTTGCCACCGGTTCCTTCGACCTGGACTTCCCCA
TACCAGACCTGATCGGCAAGACAGAAATCCTTACAGAGGAGCATCGCGAG
AAGCTCTGTTCACATCTGCCGGCTAGAGCCGAGGGATACTCCTGGTCCCT
GATCTTCAGCACCTCACAACATGGTTTCGCACTGAACTCCCTGTACCGCA
AAATGGCGCGTCTGGAGAGTCCAGTTCTGATTGTCATTGAGGATACGGAG
CACAACGTATTTGGTGCCCTCACCTCCTGCTCACTGCATGTGTCGGATCA
CTTTTACGGCACCGGTGAGTCCCTGCTCTACAAGTTTAACCCCAGCTTCA
AGGTGTTCCATTGGACTGACAAGAATATGTACTTCATCAAAGGAAACATG
GAGAGCCTTTCGATTGGCGCTGGAGACGGTCGTTTTGGCCTGTGGCTGGA
TGGTGATCTGAACCAGGGACGATCGCAACAGTGCAGCACATACGGCAATG
AGCCTCTGGCGCCACAAGAAGACTTTGTTATCAAAACACTCGAATGCTGG
GCATTTGTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCCCCGAAAAAAAACGCC
CGGCGGCACCGAGCGTTTTGAACAATTCAGATGGAGTTCTTGAGGTCATT
ACTGGATTTTATCACAGGAGTTCAGCGAGCTCGATATCAATTACGGCCCC
GCCTGTCACTCTCGCAGTACTGTTGTTATTCATTAGGCATTCTGGCGAAT
GGGAAGCCATCCCAACGGGCAATG
UFO10857.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-RC | 2303 | CG32464-RC | 498..1300 | 7..809 | 3985 | 99.8 | Plus |
| mtd-RI | 4838 | CG32464-RI | 415..1004 | 220..809 | 2905 | 99.5 | Plus |
| mtd-RAA | 3789 | CG32464-RA | 2201..2786 | 224..809 | 2900 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5282662..5282882 | 227..7 | 1105 | 100 | Minus |
| 3R | 32079331 | 3R | 5274149..5274318 | 676..507 | 820 | 98.8 | Minus |
| 3R | 32079331 | 3R | 5274732..5274895 | 509..346 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 5273950..5274082 | 809..677 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 5274966..5275088 | 346..224 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:03:13 has no hits.
UFO10857.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:28 Download gff for
UFO10857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)82Fd-RC | 469..1280 | 1..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:52 Download gff for
UFO10857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RC | 493..1304 | 1..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:05 Download gff for
UFO10857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RC | 493..1304 | 1..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:05 Download gff for
UFO10857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5274149..5274318 | 507..676 | 98 | <- | Minus |
| 3R | 5274735..5274894 | 347..506 | 100 | <- | Minus |
| 3R | 5274966..5275087 | 225..346 | 100 | <- | Minus |
| 3R | 5282665..5282887 | 1..224 | 99 | | Minus |
| 3R | 5273946..5274082 | 677..814 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:52 Download gff for
UFO10857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1100457..1100616 | 347..506 | 100 | <- | Minus |
| arm_3R | 1100688..1100809 | 225..346 | 100 | <- | Minus |
| arm_3R | 1108387..1108609 | 1..224 | 99 | | Minus |
| arm_3R | 1099668..1099804 | 677..814 | 98 | <- | Minus |
| arm_3R | 1099871..1100040 | 507..676 | 98 | <- | Minus |
