UFO10858.5prime Sequence
1077 bp (1017 high quality bases) assembled on 2012-01-19
> UFO10858.5prime
CAGTCGACATGTACGAACTGAAGACTCTGCTGCCGCAATTCGACATAAAG
CTGCCCACCTGCATGTATCCTCTCAAGAACGTTAGCCTGGCGGCGGATTC
CTTGGCCAGCGGCTCCTCCACATCCGCATCCACATCCGCGTCCACATCAT
CATGCAAATTGGAGGCCAACAGGATCGACAGAACGGGACGAAACGCAGCC
ACATGTGCACTTGATTTGGACTCTTTAGGCCGACAAATACAGCGACTGCT
AAAGGACGATACGGCATCAGTGGCCGCCCGACAGGAGAAGGTTCTCAAGC
AGCTGGAGGAGCTGAAGGCGCAGCTGGGACAAATCCGGGCGGGACTTGGT
GTTTGTGGCAAGACTTTCCAGCACACGACTGCTTTCCAGAATGGTGGATT
AAAGGAGGTGCCACTGCAGGATGTCGTCATCAATGGACATCCCAACTTCA
TACCCTATGCCTTGTTGGCCCTGAAAAATGCCTGGCGCAATCTGTACACT
ATTGATGTCAAGACCTTTACGCACTCTACGATGGCCGACATTGGACCAGC
AGCACGGGAATTCGAGGCCAACTTGGCGAAGGTTCCAGTAAACCCTGCTT
TGCCCAAGATTAGTGTGACGCTCATCTGGAAGAACTGCGAACACACCGAG
ATGATCAGCTCGCCCACCATGTACGTGCCCATCTACGGAGAGGTGAACAT
CATTCGCTATCTGGGCCGTGTGGGTCCAGCCGAGTATCGTTATGAGGGCT
CTCCGCTCTGCAATGAGATCGACCTTGTCCTGACATTTGCTACAACTGCT
GCGCTGCAACACGCACAAAACGCAGTGGCCATGGTGCGCCTGCTGGACAA
GCGACTGCAGAAGCAGCAGTATTTCGGTGGATCCCAGATGTCGTGGCGGA
TGTCGTGTCTACAGCTCACTGATACGCATGCCAGCTGTTACCGAGAAGAT
CTGACGCCTGCGCTAGTTGCTTGAGAAAATGGCAAGCTCGTGTTCAAATT
GCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGGTCTT
ATTCTTATTCTAATCATATCCGATTCC
UFO10858.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12304-RA | 1150 | CG12304-RA | 98..1099 | 9..1000 | 4740 | 98.8 | Plus |
CG12304-RB | 1051 | CG12304-RB | 245..1000 | 255..1000 | 3510 | 98.4 | Plus |
CG12304-RB | 1051 | CG12304-RB | 98..244 | 9..155 | 735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15584923..15585265 | 637..973 | 1400 | 98 | Plus |
3L | 28110227 | 3L | 15584638..15584869 | 406..637 | 1160 | 100 | Plus |
3L | 28110227 | 3L | 15584285..15584441 | 253..409 | 785 | 100 | Plus |
3L | 28110227 | 3L | 15583735..15583881 | 9..155 | 735 | 100 | Plus |
3L | 28110227 | 3L | 15583997..15584096 | 156..255 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:02:41 has no hits.
UFO10858.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:22 Download gff for
UFO10858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12304-RA | 85..1085 | 1..992 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:35 Download gff for
UFO10858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12304-RA | 90..1090 | 1..992 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:36:52 Download gff for
UFO10858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12304-RA | 90..1090 | 1..992 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:36:52 Download gff for
UFO10858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15583727..15583881 | 1..155 | 97 | -> | Plus |
3L | 15583997..15584095 | 156..254 | 100 | -> | Plus |
3L | 15584287..15584439 | 255..407 | 100 | -> | Plus |
3L | 15584640..15584868 | 408..636 | 100 | -> | Plus |
3L | 15584923..15585287 | 637..992 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:35 Download gff for
UFO10858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15576827..15576981 | 1..155 | 97 | -> | Plus |
arm_3L | 15577097..15577195 | 156..254 | 100 | -> | Plus |
arm_3L | 15577387..15577539 | 255..407 | 100 | -> | Plus |
arm_3L | 15577740..15577968 | 408..636 | 100 | -> | Plus |
arm_3L | 15578023..15578387 | 637..992 | 96 | | Plus |