UFO10861.5prime Sequence
1142 bp (1080 high quality bases) assembled on 2012-01-19
> UFO10861.5prime
CAGTCGACATGGACCACAAGAAAACGTTAACCTGGTTTTTCAGCCTGTCA
TCGGTGCGCTACGCGCAGATCTTTATCGTAATGGCGGTCGATCTGCTGAC
CCTGTCCAATCTGTATCCCAAGCACTCGAGCTACATTGCGCGTCCATTCC
TACTCTGGCAGGATCTTCAGGAGGAGGACGAACGTAGCTTGGACTCACCC
CAGCAATTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGG
GCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACT
CACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAG
GGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATG
TGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAA
CGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCC
ATATCACCAGCTCACCGTCTTTCATTGCCATACGAAATTCCGGATGAGCA
TTCATCAGCGGGCAAGATGTGATAAAGGCCGGATAAACTTGTGCTTATTT
TTCTTTACGTCTTTAAAAGGCGTATATCCAGCTGACGGTCTGGTTATAGG
TACATTGAGCACTGACTGAAATGCTCAAATTTTCTTACGATGCCATTGGG
ATATATCACGTGTATATCAGTGATTTTTTTCTCATTTAGCTCTAGCTCCT
GAAGATCCATAACTTCGTATAGCATACATAAACGGAGTTATG
UFO10861.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42615-RB | 421 | CG42615-RB | 58..258 | 9..209 | 1005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8737427..8737627 | 9..209 | 1005 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 21:03:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 778..845 | 123 | 68.1 | Plus |
UFO10861.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:28 Download gff for
UFO10861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42615-RB | 58..263 | 9..216 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:54 Download gff for
UFO10861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42615-RB | 58..263 | 9..216 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:07 Download gff for
UFO10861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42615-RB | 58..263 | 9..216 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:07 Download gff for
UFO10861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8737427..8737627 | 9..209 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:54 Download gff for
UFO10861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4624932..4625132 | 9..209 | 100 | == | Plus |
