UFO10866.5prime Sequence
1160 bp (1045 high quality bases) assembled on 2012-01-19
> UFO10866.5prime
CAGTCGACATGGACAATAAGAAGGATATATACAATCTGTGGGTGCAGTAC
ACGACAAAGAATGATGAAACCCACTTCCGGCAATTTGTGGCCCGCTTCGT
GGCCATTTGGAGGAGCCAACTGCAGCTAGACTTTCAGGCGGAAAATTGCC
CGATGTGGCACGAGGTTCAGCCGGATAGTGGTCCCCACTTGGGCCGCCTC
CCGGATGAACTCCTGCCCGCCATCGGTAAATTCATCATTGTAGCCAGAGA
TGTTTGCGAAACGGAAGGGAAACTGGAGGAGCAGGCCATTGAAGAAGTAG
CCATACTCGTGGATTGTCTGGTGATCGTGTGCCGGCACTTTGATAACATA
CTGTCCATCATCAAGTATGAATACAAGCCGAATTTGATCGCCATACTCTC
CAGGGTGTTCAAACAACAAATGGAGCTGCCGCAGAGCGTGCCCGCAATAA
GCCACCTGTTTAGCAGTTTCTCGGCATTCCTGGAAGTCATGTATGATCCA
TATCTGACGTGGCGCAGCTTCGTGCGAGGCCAGTCAGCTGACTACAGTCG
TCTTTCATATAAACCCCACTCGGTTCATGTGGAAATTGTCCCCTTTATTT
ATGATTGCTTTCAGGAGGAGAAGCTCATCCGATATGCGGAAATTGGCGAA
AGCCTGCTAAACATCCTGGGCGCTGTGATTTGCGGCTCACAGGTAGCGCC
AGAAAGCGTCTCCAGTCCCTTCCTGTGTAGTCCTTTCTCTCTTAAAAACC
GTTTAATTATTAACCTCACTTCCGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAACGCCCGGCGGCAACCGAGCGTCTGAACAATCCAGATGGAGT
TCTGAGTCATTACTGATCTATCACAGAGTCAGCGAGCTCGATATCAATAC
GCCCGCCTGCATCATCGCATACTGTGATCATAGCATCTGCGACTGAGCTC
CAACGCTGTGACTGATCGCACGCACAGACTGCCCTGCTAAATCGCATGTG
AACGGCAAATTGCATTGCCGTATCACGGACTCCAGATGCTGAACAAACAT
CCATACCTAG
UFO10866.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43367-RE | 10170 | CG43367-RE | 293..1057 | 9..773 | 3825 | 100 | Plus |
| CG43367-RF | 9817 | CG43367-RF | 1..704 | 70..773 | 3520 | 100 | Plus |
| CG43367-RD | 9842 | CG43367-RD | 293..976 | 9..692 | 3420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4194555..4194914 | 57..416 | 1800 | 100 | Plus |
| 3L | 28110227 | 3L | 4194978..4195164 | 417..603 | 935 | 100 | Plus |
| 3L | 28110227 | 3L | 4195298..4195468 | 603..773 | 855 | 100 | Plus |
| 3L | 28110227 | 3L | 4194285..4194335 | 9..59 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:03:24 has no hits.
UFO10866.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:30 Download gff for
UFO10866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1308-RE | 286..1066 | 1..781 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:57 Download gff for
UFO10866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43367-RE | 286..1066 | 1..781 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:11 Download gff for
UFO10866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43367-RE | 286..1066 | 1..781 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:11 Download gff for
UFO10866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4194278..4194335 | 1..59 | 95 | -> | Plus |
| 3L | 4194558..4194914 | 60..416 | 100 | -> | Plus |
| 3L | 4194978..4195164 | 417..603 | 100 | -> | Plus |
| 3L | 4195299..4195477 | 604..781 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:57 Download gff for
UFO10866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4194278..4194335 | 1..59 | 95 | -> | Plus |
| arm_3L | 4194558..4194914 | 60..416 | 100 | -> | Plus |
| arm_3L | 4194978..4195164 | 417..603 | 100 | -> | Plus |
| arm_3L | 4195299..4195477 | 604..781 | 98 | == | Plus |
