UFO10867.5prime Sequence
1151 bp (1058 high quality bases) assembled on 2012-01-19
> UFO10867.5prime
CAGTCGACATGATCAAAATGGACCCGAAATCCCACCAAAAGCTCTTCAAG
GAAATGGCAGAAGTCGTGTCCAATTCCAGCGATGACGGGGAGAAGTTGCT
AACCAAAAACTCTAGCAACACCATCGAGAAGTCCGAGGAAGTCTGCAAGG
AGCGCCCCGAAGCTGTGGAGCAGATGCGCATCGATGTCAATAACTCACTT
GAGGACACGAACATGAATGCGGTGGAATCAGAAGCTCAAAAGAATATCGC
CGGCCTTGATGAGGACCTTATCATGGAAGACTTCGGCGTCGAGGTCGTCC
CGTTCCACGATCCCTGGTCCAAGCTATTGATAAAGCACCCCGTGCGCAAC
AAAAGGTGCGGCCATATCTACGACCGCGAAACGGTTTTAATGATCATCAA
GGACAACATTGGCATCCTATGCCCGGTGCGCGACTGTCCCAACTTGTCCG
ACATCAAGTTAGAGCACCTGGTCAAGGACCCCGACGTGGAGCAGGAGTTG
CAAAAGCGCAAGTCCGACAAGATCCAGAATGAAACTTCCTCGGATGAGGA
CGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAGTCATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCA
ACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGAT
CTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTG
CCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGA
AGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACC
TTGTCGCCTTGCGTATTATTTTTGCCCATGGTGAAAACGGGGGTGAAGAA
GTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGG
GATTGGCTGAAACGAAAAACATTTTCCTCATAAACCCTTTAGGGAAATAG
GCCAGGTTTCACCCGTAAACGCACATCTCTTGGCGAAATATTGGGGTAAG
AACTGCCCGGAAATCTGCTTCGTGGTTATTCCATCTCCAGTGGCGATGAT
A
UFO10867.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42300-RA | 726 | CG42300-RA | 71..613 | 9..551 | 2715 | 100 | Plus |
| CG42299-RA | 679 | CG42299-RA | 21..566 | 9..551 | 2600 | 98.5 | Plus |
| cerv-RD | 1141 | CG15645-RD | 485..955 | 103..552 | 900 | 80.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15555366..15555855 | 551..62 | 2450 | 100 | Minus |
| X | 23542271 | X | 15575060..15575552 | 551..62 | 2325 | 98.6 | Minus |
| X | 23542271 | X | 15577172..15577482 | 552..242 | 745 | 82.6 | Minus |
| 3L | 28110227 | 3L | 17479760..17480055 | 257..552 | 565 | 79.4 | Plus |
| X | 23542271 | X | 15577548..15577642 | 197..103 | 385 | 93.7 | Minus |
| X | 23542271 | X | 15555921..15555975 | 63..9 | 275 | 100 | Minus |
| 3L | 28110227 | 3L | 17479577..17479663 | 104..190 | 270 | 87.4 | Plus |
| X | 23542271 | X | 15575609..15575663 | 63..9 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:03:29 has no hits.
UFO10867.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:30 Download gff for
UFO10867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42300-RA | 37..582 | 9..555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:09:59 Download gff for
UFO10867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42300-RA | 71..617 | 9..556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:13 Download gff for
UFO10867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42300-RA | 71..617 | 9..556 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:13 Download gff for
UFO10867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15555366..15555853 | 64..551 | 100 | <- | Minus |
| X | 15555921..15555975 | 9..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:09:59 Download gff for
UFO10867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15449399..15449886 | 64..551 | 100 | <- | Minus |
| arm_X | 15449954..15450008 | 9..63 | 100 | | Minus |
