UFO10868.5prime Sequence
1117 bp (1018 high quality bases) assembled on 2012-01-19
> UFO10868.5prime
CAGTCGACATGTGCGACGTGCTCCTCCCATGCGAGTATAATCCAAAGGAA
TGTCCGAGTCCTGCGGCGGAGAAGAGCCGCCTCTTCACGATCCTTTTGCT
CTACTGTTGGCAGCGGGAGTACGATAAGAGACCCTACCGCCAGTTCCAGT
TCAAGCGACTCACGTTCGAGGAACGGATTGGTCGGAGGTACCACTGCATC
CGTGACTTGCGGATCATCGTTAACTATCTGCTGCGGCGTCCCCAGTTGTC
TGTCCAAATTTCCAGCTTGGTTGTCAGCAACTGGGATGCGGGCTTGCTGA
AGGACTTTGTCCGCTCGCTGCTCCCCGTTTGGTACATCGAGCTGCGACTG
ATGCGGTTTCCTCGGGAGTTCTTCGTGATGCTGCGTCTCAATGCGGCCAA
GATGAATGTTAGCCAGCTCAGCTTGGAAGGAACACCCCTCACCGATGAAG
ACGTGCGCATCCTGCGAGAATTCCTGCTGGTAAGCAAGACTCTGCGCAGG
CTCAACGTGTCCAGCTGCAGCCTGACACAGTTCAACTTCGCTCTGATCGC
GGACGGAGTGTATAAGTCGCCTGGAGTGCGACGCTTGAGCGCCAACCGGC
TGCTGGGGATGAGCCTCAGCCTGGACACGGAGAAAATTTCATCCGTGCTG
AGCTCGCTGCTGATGCAGAATACACTCTGGGCTCTTTCGCTGGAGCACTG
CGAACTGACCGCCCAGGACATGATTCCCATTGCCGAGCACCTGGCACGGA
CCAACTCGAAATTTCGGCGCCTGCGAATCGCCTGCAACAAGATCGGTCCG
GATGGAGCCTTCTTTCTGCTGCGTGGAATGTCCATGGGTGGCAATCTGGA
GTTGCTGGACCTGAGCTACTGCTCGATTGGTACGCACGGCGGCGAGTGGG
TGGCCAAGTACCTGGCTTCGTGCCGCAAACTGCAGTCCTGCACTTGAACT
ACACGACATGGGTCCGACGGCAGTGATTCTCATCCTTCTGGCATGAAGAA
AAGTGCAAGCTGGAAAACTAACTTGTTTTGCAACCACTTTGACTCGCGTG
CGGGATGTATAGTGGGGTCGCTTGCTGATGCCGAAGTAGTACTCCCTTCC
GAGACTGTAACATTCAG
UFO10868.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8197-RB | 1390 | CG8197-RB | 65..1165 | 9..1103 | 5100 | 98.1 | Plus |
| CG8197-RA | 1288 | CG8197-RA | 65..1165 | 9..1103 | 5100 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9060686..9061367 | 1103..428 | 2775 | 96.5 | Minus |
| 2R | 25286936 | 2R | 9061439..9061860 | 430..9 | 2110 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 21:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\BuT5 | 669 | Dbuz\BuT5 BUT5 669bp | 73..112 | 1007..1046 | 110 | 75 | Plus |
UFO10868.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:31 Download gff for
UFO10868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8197-RA | 61..1173 | 1..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:01 Download gff for
UFO10868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8197-RA | 61..1173 | 1..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:15 Download gff for
UFO10868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8197-RA | 61..1173 | 1..1113 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:15 Download gff for
UFO10868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9060678..9061365 | 430..1113 | 96 | <- | Minus |
| 2R | 9061440..9061864 | 1..429 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:01 Download gff for
UFO10868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4948183..4948870 | 430..1113 | 96 | <- | Minus |
| arm_2R | 4948945..4949369 | 1..429 | 99 | | Minus |
