UFO10871.5prime Sequence
1037 bp (1022 high quality bases) assembled on 2012-01-19
> UFO10871.5prime
CAGTCGACATGTCGAATTATAGGGTTACATATAAAAATCGATGCATTAGC
TGTGGCGTCGAAGTACCAGTCCTTTCCACAAATGGATGCCATTTCAAAGT
TCAGGACAAATTTAATTCTTGTGGCTCCAAAATAAGCAATCCTCGAAAAC
GGCCGAGTCAAATAAAAAGGCACAGGAATATTTCTCAAAGAAAGCTAAAT
AATGGTTTTAAATGGTCTTCATCATCTACGAAAAAACGATTCTATCCGTT
AGTAAAGAAACAAAAATTGTTGATGTCCTCAGAGCCCTCTCATAAGGCTC
TAATTTTAAGAGAGATGATTAGGTTAGGAAGAAAACCGAATCGAAAGTTC
GAAAAGGCTGCGAGAAATAGTGTATTTCCGGGCATCTGCCGTACGATATT
GAAACTGCACCAGTATACTAATCTTGTACAGGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAAT
CCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGC
GAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTT
GTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGA
TGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATA
TTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGT
TTAAATCAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAACAT
ATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTCACCGTAACACGC
ACATCTGCGAATATATGTGTAGAACTGCCGGATATCGTCGTGGTATTCAC
TCCAGAGCCGATAAAACGTTTCAGTTGTCTATGGAAA
UFO10871.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42847-RA | 817 | CG42847-RA | 153..576 | 8..431 | 2120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9428022..9428396 | 8..382 | 1875 | 100 | Plus |
| 2L | 23513712 | 2L | 9428449..9428499 | 381..431 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:03:37 has no hits.
UFO10871.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:32 Download gff for
UFO10871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42847-RA | 102..542 | 1..439 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:03 Download gff for
UFO10871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42847-RA | 144..584 | 1..439 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:16 Download gff for
UFO10871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42847-RA | 144..584 | 1..439 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:16 Download gff for
UFO10871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9428013..9428395 | 1..381 | 98 | -> | Plus |
| 2L | 9428450..9428499 | 382..431 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:03 Download gff for
UFO10871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9428013..9428395 | 1..381 | 98 | -> | Plus |
| arm_2L | 9428450..9428499 | 382..431 | 100 | == | Plus |
