UFO10872.5prime Sequence
995 bp (993 high quality bases) assembled on 2012-01-19
> UFO10872.5prime
CAGTCGACATGGTCTCCTTTGGCGGTGTGGCAAAACTATTGAGCAGCTTC
GAGTGCTGTGCCAGTTCGTGGGTCAAAGCCGTAAATCCCGGATGGTACGA
GGCTCGTGAGATTCCGAAGACCATCCTGATCCAGAAAGTGCGACAGGTGC
CCCAGAATACCAGGGTGATACGCCAGAGACCCCAAACCGCGGAGCCGCCC
AAAAAATCCTCCAGCCAAAAGCGCCAACTTTATCTCGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGA
AAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACTG
TAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTC
GTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAA
CGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTC
ATTGCCATACGAAATTCCGGATGAGCATTCATCAGGGGGCAGGATTGTGA
ATAAAGGCCGGATAAAACTTGTGCTTATTTTTTTTTACGGTCTTA
UFO10872.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42855-RB | 945 | CG42855-RB | 78..305 | 9..236 | 1140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18687449..18687676 | 9..236 | 1140 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 21:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 805..872 | 123 | 68.1 | Plus |
UFO10872.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:32 Download gff for
UFO10872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42855-RB | 72..311 | 2..243 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:05 Download gff for
UFO10872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42855-RB | 72..311 | 2..243 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:18 Download gff for
UFO10872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42855-RB | 72..311 | 2..243 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:18 Download gff for
UFO10872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18687443..18687676 | 2..236 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:05 Download gff for
UFO10872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14574948..14575181 | 2..236 | 98 | == | Plus |
