UFO10874.5prime Sequence
1115 bp (1023 high quality bases) assembled on 2012-01-19
> UFO10874.5prime
CAGTCGACATGTTGGCCGCTGGCAGCAGTGAGATCACTGACTTTGGGCCA
CACTCGCGCCAACTAACGGCTGGCAACACGCCCAAGCGACCCAACAAGGC
CAGCAGCCACCGTCCTGGTTCTGGTTCTGGTCCTGGCCCAATGACAACTG
GTGGCACCAGCTCAGCGAGCGGTAACGGAAACAGCGGTGGGGCTCTGAAC
GCCATTCCCACGACGAAGGTCGGGAGCGGAGGAGGCGGCGGAGGCGCCAT
GTCCGCCACAACGGTGACTGCGACGACGGGGAAAGCTACTGTAAGCCATG
GCCATAGTCATGGCCACGCTCTGGGGCGCAGCGAGACGAGGAGCGGTCGG
AGCGCAGCAGCTGGACGCTCCAATGTGGACGGATTCGTTGGCGGAATCGA
GACGTACTTGGGCCTCATCGGGTGGCGAAAAAAGTGCCTGTATACCCTGC
TGCTACTGCTGATGCTGCTCATCATCACGAACCTGGTGCTCACCCTCTGG
ATACTCAAGGAGGGCATGGGGCAGCTTAAAATCGTACCCGGTGGCATACA
GCTGTCCGGACAAGCGATAATTATGGACATGCTGCGCGCCTCCACAATCC
GTTCGCGGCACGGTCAACCCATTTCCATAGAGTCATCACGTAACTTTTCA
ATCAATACACGTGATCCGAATGGCATGATTGAGAATCATTTATTCCTGGG
ACACGATAAGTTCGAGTGCCTGTCGGCGGGATTTCGCATAAACGACACCA
ACGGACGCAGCCTGTTCTCCGTGAACCGAGATGAAGTCACCATCGGAGCA
CATGCCCTGCGGATCGACGGCGAAGGTGGCGCCGTCTTCCGGGAATCCGT
GCAGACGCCCCATGTGCGGGCCGAGCCCGGCCGGGAGCTGAGACTCGAAT
CGCCCACACGCCAATTGGAGATGACGGCGGCCAAGGACATCAATTTGCAA
TCGCGGGCAGAGGCATAGAAGTCGTGACCTGTAGACGTCAAGTTCCGAGC
CTCGATGGAGCTTGCGCTGCAGTCTCCAGATACTTATGCCACTGCGACGC
AGCGTCATTCTGGGCACTGCCAAGCAGATCCAATGCACCGGTCTCACTCT
GCGCTGTTCATGGCA
UFO10874.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scgdelta-RE | 2972 | CG14808-RE | 422..1479 | 9..1040 | 4750 | 97.2 | Plus |
| Scgdelta-RD | 2336 | CG14808-RD | 609..1666 | 9..1040 | 4750 | 97.2 | Plus |
| Scgdelta-RC | 2966 | CG14808-RC | 416..1473 | 9..1040 | 4750 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1749912..1750413 | 510..9 | 2510 | 100 | Minus |
| X | 23542271 | X | 1748032..1748302 | 892..622 | 1325 | 99.3 | Minus |
| X | 23542271 | X | 1749697..1749819 | 630..508 | 615 | 100 | Minus |
| X | 23542271 | X | 1746699..1746812 | 1001..891 | 410 | 94.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:03:45 has no hits.
UFO10874.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:17:33 Download gff for
UFO10874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgdelta-RD | 602..1109 | 1..509 | 99 | -- | Plus |
| Scgdelta-RD | 1127..1714 | 510..1077 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:10:08 Download gff for
UFO10874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgdelta-RA | 415..922 | 1..509 | 99 | -- | Plus |
| Scgdelta-RA | 940..1527 | 510..1077 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:37:20 Download gff for
UFO10874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scgdelta-RC | 409..916 | 1..509 | 99 | -- | Plus |
| Scgdelta-RC | 934..1521 | 510..1077 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:37:20 Download gff for
UFO10874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1746687..1746810 | 893..1011 | 94 | <- | Minus |
| X | 1748032..1748293 | 631..892 | 100 | <- | Minus |
| X | 1749697..1749817 | 510..630 | 100 | <- | Minus |
| X | 1749913..1750417 | 1..509 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:10:08 Download gff for
UFO10874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1640720..1640843 | 893..1011 | 94 | <- | Minus |
| arm_X | 1642065..1642326 | 631..892 | 100 | <- | Minus |
| arm_X | 1643730..1643850 | 510..630 | 100 | <- | Minus |
| arm_X | 1643946..1644450 | 1..509 | 99 | | Minus |
