UFO10876.5prime Sequence
1107 bp (1027 high quality bases) assembled on 2012-01-19
> UFO10876.5prime
CAGTCGACATGCCACACGTGAGATTTGGCTACAATGGAAAGCCAGGAGCA
CCAAGAACGGGTATGATAACCGCACTTGAGGTAAAGAAATGCCTCAATAT
AACAATCCTAAAAAATTTGAATAAAAAAAAGTTATTGGGTGTTTGGTTTG
CATACGCAACAACACCTGTCAATATACCCGCCTACAAACGTCGTTGTTCA
TCGTATAATGTTCAGGATAGTACCTTTTTCGATACCCATATCGTGTATAC
GGACTACAAGCACGTGACTGTCACCTATGACTGCAAGTACAACGATATGA
CCATGCTGCATGACCTTAAAGTCCGCGTTTTAACACGCACTCGAACCCCT
GTGCTCAAAGATTTAAACCAGGCCTTATACTTTCTAGAGGAACATGCATT
TTCAATCAAAAACTTGGATTTCCTCAAGTCAAAAGCATTCTGCTTTGAGT
GGTACGTGTTGAAATACCACTCCAAAACACGACCGGGTCGATTCAATGCG
CCCATCATCCGGGTTTGGGATCATGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCT
GAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCA
TGGTGAAACGGGGGCGAAGAAGTTGTCCATATTGCCACGTTTAAATCAAA
CTGGTGAACTCCCCCAGGGATTGCTGAGACGAAAAACATATTCCTCAATA
ACCCTTTAGGAAAAGGCAGTTTCACGTACCCGCCACATCTGCGAATTAAT
GTGGTAGAAACTGCGAAATCGTCGTGTATCACTCGAGCGTTGAAAACGTT
CAGTGGT
UFO10876.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43050-RA | 1119 | CG43050-RA | 198..718 | 3..524 | 2585 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13120158..13120366 | 316..524 | 1045 | 100 | Plus |
| 2L | 23513712 | 2L | 13119996..13120092 | 223..319 | 470 | 99 | Plus |
| 2L | 23513712 | 2L | 13119843..13119935 | 130..222 | 465 | 100 | Plus |
| 2L | 23513712 | 2L | 13119696..13119783 | 44..131 | 440 | 100 | Plus |
| 2L | 23513712 | 2L | 13119496..13119533 | 9..46 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:58:21 has no hits.
UFO10876.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:16:44 Download gff for
UFO10876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43050-RA | 196..718 | 1..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:20 Download gff for
UFO10876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43050-RA | 196..718 | 1..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:34:58 Download gff for
UFO10876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43050-RA | 196..718 | 1..524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:34:58 Download gff for
UFO10876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13120158..13120366 | 316..524 | 100 | == | Plus |
| 2L | 13119489..13119532 | 1..45 | 93 | -> | Plus |
| 2L | 13119698..13119783 | 46..131 | 100 | -> | Plus |
| 2L | 13119845..13119935 | 132..222 | 100 | -> | Plus |
| 2L | 13119996..13120088 | 223..315 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:20 Download gff for
UFO10876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13120158..13120366 | 316..524 | 100 | == | Plus |
| arm_2L | 13119489..13119532 | 1..45 | 93 | -> | Plus |
| arm_2L | 13119698..13119783 | 46..131 | 100 | -> | Plus |
| arm_2L | 13119845..13119935 | 132..222 | 100 | -> | Plus |
| arm_2L | 13119996..13120088 | 223..315 | 100 | -> | Plus |
