UFO10877.5prime Sequence
1122 bp (1024 high quality bases) assembled on 2012-01-19
> UFO10877.5prime
CAGTCGACATGGAGCAGCTATTTCAGAATTACCGCGACGATGAGCGAAGG
ATCGGCGAGGAGTATCTGTCAAGTCTCCAGGACCTCAACTGCAACAGCAA
GCCATTGATCAATATGCTCACGATGCTTGCCGAGGAGAACATCAACTACG
CCCACATCATAGTTAAAGTGGTGGAATATTACATCAGCCAGGTTAACAAA
ACAAAAGCGTATTTACTTAAAAACAAAGACACTCCAGCTTACACACAGCT
AATAGACGGTCGACACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAA
TTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCA
TTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCC
AGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAA
AACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGG
TGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAAC
CCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGA
ATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCCAGAGCGA
TGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTACAGGTGAACACTAT
CCCATATCACCAGCTCACCGTCTTTCATTGCATACGAAATCCGGATGAGC
ATTCATCAGGCGGGCAAGATGTGAATAAAGGCCGGATAAAACTTGTGCTT
ATTTTTCTTTACGTCTTTAAAAGGCGTAAAATCAGCTGAACGGTCTGATT
ATAGTACTTTGGCACTGACTGAATGCCTCAAATGTTTCTTTACATGCATT
GGATATATCAACGGTGCATATC
UFO10877.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:58:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Inr-a-RC | 819 | CG10228-RC | 234..491 | 9..266 | 1290 | 100 | Plus |
| Inr-a-RH | 6199 | CG86-RH | 234..418 | 9..193 | 925 | 100 | Plus |
| Inr-a-RE | 5979 | CG10228-RE | 234..418 | 9..193 | 925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:58:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14869974..14870231 | 266..9 | 1290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:58:29 has no hits.
UFO10877.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:16:45 Download gff for
UFO10877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcf11-RC | 224..493 | 1..270 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:24 Download gff for
UFO10877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inr-a-RC | 225..494 | 1..270 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:02 Download gff for
UFO10877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inr-a-RC | 225..494 | 1..270 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:02 Download gff for
UFO10877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14869974..14870239 | 1..266 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:24 Download gff for
UFO10877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10757479..10757744 | 1..266 | 98 | | Minus |
