UFO10882.5prime Sequence
1047 bp (1016 high quality bases) assembled on 2012-01-19
> UFO10882.5prime
CAGTCGACATGGCAGTCGAGGAATTAGAGAGCAAAATTGTCCAACTGTTC
GTAGAGAACCCCCTCCTGCGCTACGGTGCTGTTGGTCTGTGCGCCATCTA
CCTGATCTTTGGCTGGGGCGCCCAACTACTGTGCAACATCATTGGGGTTC
TGTACCCTGCATATATTTCCATCCATGCCATCGAGTCCAGCACAAAGCAG
GACGACACCAAGTGGCTGATCTACTGGGTCACGTTTGGAATCTTCACCGT
GATTGAATTCTTTTCGAGTCTGCTAACTTCGGTGATTCCCTTTTACTGGC
TGCTGAAGTGTGCTTTCCTCATCTGGTGCATGCTGCCCACGGAACAGAAT
GGTTCTACCATCATCTACAACAAGCTGGTGCGACCCTACTTCCTGAAACA
TCACGAATCCGTTGACAGGATCATCGATGATGGCATGAAGAAAGCCGCTG
GAGTGCTGAAGCATGACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGC
CAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGA
AACGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCATAACTGGTG
AACTCACCCAGGGATTGGCTGAGACGAAAACATATCTCATAAACCCTTTA
GGAATAGCCAGGTTTCACCGTACACGCCACATCTGCGAATATTTGTGTAG
AACTGCCGGAAATCGTCGTGTATTCCCTCCAGAGCGATGAAACGTTT
UFO10882.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8331-RC | 1023 | CG8331-RC | 370..830 | 7..467 | 2305 | 100 | Plus |
| CG8331-RD | 846 | CG8331-RD | 261..653 | 75..467 | 1965 | 100 | Plus |
| CG8331-RB | 877 | CG8331-RB | 292..684 | 75..467 | 1965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14172289..14172522 | 75..308 | 1170 | 100 | Plus |
| 3R | 32079331 | 3R | 25786726..25787057 | 421..90 | 1090 | 88.6 | Minus |
| 2R | 25286936 | 2R | 14172582..14172683 | 307..408 | 510 | 100 | Plus |
| 2R | 25286936 | 2R | 14172158..14172228 | 7..77 | 355 | 100 | Plus |
| 2R | 25286936 | 2R | 14172747..14172805 | 409..467 | 295 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BS | 5142 | BS BS 5142bp | 2465..2510 | 870..825 | 113 | 71.7 | Minus |
UFO10882.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:16:48 Download gff for
UFO10882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8331-RC | 1..466 | 3..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:41 Download gff for
UFO10882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8331-RC | 362..830 | 1..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:16 Download gff for
UFO10882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8331-RC | 362..830 | 1..467 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:16 Download gff for
UFO10882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14172150..14172226 | 1..75 | 94 | -> | Plus |
| 2R | 14172290..14172522 | 76..308 | 100 | -> | Plus |
| 2R | 14172584..14172683 | 309..408 | 100 | -> | Plus |
| 2R | 14172747..14172805 | 409..467 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:41 Download gff for
UFO10882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10060252..10060310 | 409..467 | 100 | == | Plus |
| arm_2R | 10059655..10059731 | 1..75 | 94 | -> | Plus |
| arm_2R | 10059795..10060027 | 76..308 | 100 | -> | Plus |
| arm_2R | 10060089..10060188 | 309..408 | 100 | -> | Plus |
