UFO10883.5prime Sequence
1026 bp (1024 high quality bases) assembled on 2012-01-19
> UFO10883.5prime
CAGTCGACATGCAGCTGAGTATTATAGTATTGCTCTTGTGCTCGGTGGTT
GTTGCAAATTCACTTGCCCCAAGTCAACTGGCATCGAAAACCCCATCACC
CAATGTAAGCAAGGATCAGCCGTCATCCAGGGAGGAGAAACCCAGTTTGA
AACCGTGCAAACCCATCGAGACTGTGAGTTCAGAGCCAAAAGGACTAGGC
AATACTCCTAAAGTCGGTTCAATTACTCCGGAATCAGCTAAAACGTCTGG
CACAACCGTGGATAAAAGTCTGGATGATTGCGAACCCATTCCCGAGGGTA
TTGGATCTCGATTGAATGCGAGAACTCTTCAAACACTGGTTATAAAAAAT
AATAATAACCCTCTTTTTAATGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATG
GTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAA
ACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAA
TAAACCCTTTAGGGAATAGGCCAGGTTTCACCGTAACACGCCACATCTTG
CGATATATGTGTAGAAACTGCCGGAATCGTCGTGTATTCACCCCAGAGCG
ATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGTGAACAC
TTATCCCATATCACCAGCTTCACCGT
UFO10883.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43093-RA | 476 | CG43093-RA | 4..366 | 9..371 | 1815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22769885..22770235 | 371..21 | 1755 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:59:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 5929..5965 | 321..357 | 113 | 78.4 | Plus |
UFO10883.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:16:49 Download gff for
UFO10883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43093-RA | 2..366 | 7..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:45 Download gff for
UFO10883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43093-RA | 2..366 | 7..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:19 Download gff for
UFO10883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43093-RA | 2..366 | 7..371 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 21:35:19 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 18:07:45 has no hits.
