UFO10884.5prime Sequence
995 bp (994 high quality bases) assembled on 2012-01-19
> UFO10884.5prime
CAGTCGACATGCCAGTGAAAAAGCAAGAAGCTCATCGGGCTCTCGAGCTG
CTCGAGGACTACCACGCGAGACTTTCGGAGCCGCAGGATCGGGCGCTGCG
TATTGCAATCGAACGCGTTATACGCATATTTAAATCTCGCTTGTTTCAAG
CGCTGTTAGATATACAAGAATTCTATGAATTGACATTATTGGATGACTCG
AAGAGCATACAACAAAAGACAGCGGAGACCTTGCAAATTGCAACCAAATG
GGAAAAGGATGGCCAGGCAGTCAAAATAGCTGATAATCAGCGCATGCGCA
TCGAATCGGACACGGAAAATGCCAAGGAGCCAACTGTCGAGCAGCAGCAA
AAGCAGCAGCAAGCGCAGCAGCGCAGTTCCCGCTCCCCGCAGCAGCAGAA
TCCGCAGCAGCAGCAGGGATCCAAATCGAGGAGCGGGTCCCAGACTATAC
AGATACAGTCACTTACACAGACATACCCAAACGCACACCAGCGCAAGCGA
GTCCTCGTGAGCCTCCATCCACATCAACATCAACATCAAAGCCAAATTCA
ACACCAACACCATTACCAACTTCGCCATAACAACGGCATTCAAGCCAAAA
TGCTTAAGCGCGCTTTTGAGTCCACCGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAAC
CTGATCGCCAGCGGCATCAGCACCTTGTCCGCCTTGCCGTATAAA
UFO10884.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dlg1-RO | 2363 | CG1725-RO | 626..1243 | 9..626 | 3090 | 100 | Plus |
| dlg1-RI | 2114 | CG1725-RI | 371..994 | 9..626 | 3020 | 99 | Plus |
| dlg1-RJ | 2102 | CG1725-RJ | 359..982 | 9..626 | 3020 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11387992..11388171 | 447..626 | 900 | 100 | Plus |
| X | 23542271 | X | 11387772..11387933 | 285..446 | 810 | 100 | Plus |
| X | 23542271 | X | 11376840..11376973 | 26..159 | 670 | 100 | Plus |
| X | 23542271 | X | 11381854..11381980 | 158..284 | 635 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:59:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2538 | 340..570 | 237 | 60 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 549..634 | 516..600 | 130 | 62.8 | Plus |
| rover | 7318 | rover ROVER 7318bp | 1930..1997 | 531..598 | 123 | 68.1 | Plus |
UFO10884.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:16:50 Download gff for
UFO10884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlg1-RO | 592..1221 | 1..635 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:49 Download gff for
UFO10884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlg1-RO | 620..1249 | 1..635 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:23 Download gff for
UFO10884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dlg1-RO | 620..1249 | 1..635 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:23 Download gff for
UFO10884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11387772..11387933 | 285..446 | 100 | -> | Plus |
| X | 11387992..11388177 | 447..635 | 97 | == | Plus |
| X | 11376842..11376973 | 28..159 | 100 | -> | Plus |
| X | 11381856..11381980 | 160..284 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:49 Download gff for
UFO10884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11270875..11271006 | 28..159 | 100 | -> | Plus |
| arm_X | 11275889..11276013 | 160..284 | 100 | -> | Plus |
| arm_X | 11281805..11281966 | 285..446 | 100 | -> | Plus |
| arm_X | 11282025..11282210 | 447..635 | 97 | == | Plus |
