UFO10885.5prime Sequence
1049 bp (1040 high quality bases) assembled on 2012-01-19
> UFO10885.5prime
CAGTCGACATGAAATTACTCTCTGCGGTTCTTCTAATAGGTACCTTAAGT
GCCATTTGTCTTGGCCAAAAGGAACCCATATGCAGGTCTGATCCGAGTGT
TGTCGGAAATTGTGGGCATAAAATTAAAGGGTATACCTATGAAGTTCGAA
AAAATAATTGCAAGAAGTTCCGGGCGATGGCCTGTAAGGTAACTGGAAAC
TTTTTCCGTAGCAGGGATGCGTGCAATGCGAAGTGCAAGGACACCAGGAA
GCCAGCTCAAAGCGGAGTCATTGAATTCTTCAGTCGAACGGTGTCGCAGT
TTCTGCAGATGATCTTAAGCCTAATGAGTTGGGCCGGATTTGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTT
GCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATA
TTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGA
GACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTT
CACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAA
TCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATG
GAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCCTCCCCG
TCTTTCATTGCCATACGAAATTCCGGGATGAAGCATTCATCAGCCGGGC
UFO10885.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42463-RB | 384 | CG42463-RB | 15..347 | 9..341 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3668728..3668993 | 341..76 | 1330 | 100 | Minus |
| 2L | 23513712 | 2L | 3669054..3669120 | 75..9 | 335 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 910..977 | 123 | 68.1 | Plus |
UFO10885.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:16:50 Download gff for
UFO10885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42463-RB | 7..351 | 1..345 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:54 Download gff for
UFO10885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42463-RB | 7..351 | 1..345 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:25 Download gff for
UFO10885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42463-RB | 7..351 | 1..345 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:35:25 Download gff for
UFO10885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3669054..3669128 | 1..75 | 96 | | Minus |
| 2L | 3668728..3668993 | 76..341 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:07:54 Download gff for
UFO10885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3668728..3668993 | 76..341 | 100 | <- | Minus |
| arm_2L | 3669054..3669128 | 1..75 | 96 | | Minus |
