UFO10888.5prime Sequence
1091 bp (1010 high quality bases) assembled on 2012-01-19
> UFO10888.5prime
CAGTCGACATGTCGAATATACTTGCTGCCAAACTCGACTGCCAATGCGCC
GGAAAAAACAGTCCCATGGATTCGGTGATAGTGCCGATTACCCAGGAACT
GAAGTGCATGCAAAAACTGGTCAAAAGGGTAAGACATTTTCAAATGGCCA
GGCTTTTCCAAAGCGAATCTGAGATGTACGCTGAAGAACTAAAGGCCCGG
AATCTTGCCATTTGGCGTGAACCTGATTATCGATACTGCAAGGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGA
CTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACA
GGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATC
GCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCAC
AAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCT
TGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCAT
ATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTG
AGACGAAAAATATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTT
TCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAA
TCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATG
GAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGT
CTTTCATTGCCATACGACATTCCGGATGAGCATTCATCAGCGGGCAAAAT
GTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTACCGGTCTTT
AAAAGGCCGTAATATCCAGCTGAACGGTCTGGTATAGGTCATGGAGCAAC
TGACTGAAATGCCTCAAATGTTCTTTACCAGGCCATTGGGG
UFO10888.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42703-RA | 488 | CG42703-RA | 86..319 | 9..242 | 1170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:59:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23101401..23101623 | 242..20 | 1115 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:59:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 810..877 | 123 | 68.1 | Plus |
UFO10888.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-01-19 16:16:51 Download gff for
UFO10888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42703-RA | 6..251 | 1..251 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:07:57 Download gff for
UFO10888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42703-RA | 82..327 | 1..251 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:35:27 Download gff for
UFO10888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42703-RA | 82..327 | 1..251 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 21:35:27 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 18:07:57 has no hits.
